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Add gVCF plotting support #7

Merged
merged 9 commits into from
Jul 9, 2024
Merged

Add gVCF plotting support #7

merged 9 commits into from
Jul 9, 2024

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btmonier
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@btmonier btmonier commented Jul 9, 2024

This PR does the following:

  • Added new visualization method, plotGvcf():
    • auto plotting various gVCF metrics
    • granular metric support through formula subsetting
  • Added new accessor and setting method, seqnames()
    • Returns all contig IDs found in a PHGMetrics object
    • Setter version (seqnames()<-) will update old IDs found within a
      data.frame object
  • Added new default methods to plotGvcf() and plotDot() for PHGMetrics
    objects that only contain one alignment or gVCF dataset

@btmonier btmonier requested review from tcasstevens, lynnjo and zrm22 July 9, 2024 18:05
@btmonier btmonier self-assigned this Jul 9, 2024
@btmonier btmonier merged commit 4e6bca2 into main Jul 9, 2024
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@btmonier btmonier deleted the gvcf-metrics branch July 9, 2024 19:01
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@zrm22 zrm22 zrm22 approved these changes

@tcasstevens tcasstevens tcasstevens approved these changes

@lynnjo lynnjo Awaiting requested review from lynnjo

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@btmonier @tcasstevens @zrm22