This pipeline is ran by upstream Gitlab nextflow_ci HGI repo https://gitlab.internal.sanger.ac.uk/hgi-projects/nextflow_ci/-/tree/cellranger_sbw .
It pulls cellranger data of @sbw experiments from google-spreadsheet list of sanger_sample_ids.
See inputs.nf in usptream repo.
See uptream repo branch template for instructions on how to run pipeline.
forked from wtsi-hgi/nf_irods_to_lustre
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Fetch Cram files and/or Cellranger data from Sanger Irods to /lustre
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marcus-tutert/nf_irods_to_lustre
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Fetch Cram files and/or Cellranger data from Sanger Irods to /lustre
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