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Merge pull request #192 from markovmodel/final-published-version
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Final published version
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cwehmeyer authored Jan 7, 2019
2 parents 22a863c + ae8bbc2 commit 258daed
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67 changes: 54 additions & 13 deletions manuscript/livecoms.cls
Original file line number Diff line number Diff line change
Expand Up @@ -49,6 +49,9 @@
\newif\if@pubversion
\DeclareOption{pubversion}{\@pubversiontrue}

\newif\if@ASAPversion
\DeclareOption{ASAPversion}{\@ASAPversiontrue}

%% Linespacing.
\newif\if@onehalfspacing
\newif\if@doublespacing
Expand Down Expand Up @@ -247,6 +250,9 @@
\newcommand{\pubvolume}[1]{%
\appto{\@publishedvolume}{#1}{}{}
}
\newcommand{\pubissue}[1]{%
\appto{\@publishedissue}{#1}{}{}
}
\newcommand{\pubyear}[1]{%
\appto{\@publishedyear}{#1}{}{}
}
Expand All @@ -260,24 +266,42 @@
\appto{\@publisheddateaccepted}{#1}{}{}
}

%--------------------------------------------------------
% Footers
% 1. Error Check for conflicting class options
\if@pubversion
\lfoot{\ifthenelse{\value{page}=1}
{\small\color{LiveCoMSMediumGrey}Received: \@publisheddatereceived \\ Accepted: \@publisheddateaccepted}
{~\\~}
}%
%\lfoot{\small\color{LiveCoMSMediumGrey}Received: \@publisheddatereceived \\
% Accepted: \@publisheddateaccepted}%
\cfoot{\small\color{white} \vspace{\baselineskip} \small\color{LiveCoMSMediumGrey} \thepage\space of\space\pageref{LastPage}}%
\rfoot{\small\color{LiveCoMSMediumGrey}\href{https://doi.org/\@publishedDOI}{https://doi.org/\@publishedDOI}\\
{\it Living J. Comp. Mol. Sci.} \@publishedyear, \@publishedvolume, \@publishedarticlenum }%
\else
\cfoot{\small\color{white} \vspace{\baselineskip} \small\color{LiveCoMSMediumGrey} \thepage\space of\space\pageref{LastPage}}%
%\rfoot{\small\color{LiveCoMSMediumGrey}Page \thepage\space of\space\pageref{LastPage}}%
\if@ASAPversion
\ClassError{livecoms}
{Nope nope nope, you cannot invoke 'pubversion' and 'ASAPversion' simultaneously. Please correct the class options.}
\fi
\fi
% 2. Publication Version: put submission/acceptance dates in left footer and citation information in right footer
%%% DWS NOTE: would be nice if the left footer was in an if A-or-B type logical statement
\if@pubversion
\lfoot{\ifthenelse{\value{page}=1}
{\small\color{LiveCoMSMediumGrey}Received: \@publisheddatereceived \\ Accepted: \@publisheddateaccepted}
{~\\~}
}%
\rfoot{\small\color{LiveCoMSMediumGrey}\href{https://doi.org/\@publishedDOI}{https://doi.org/\@publishedDOI}\\
{\it Living J. Comp. Mol. Sci.} \@publishedyear, \@publishedvolume\nobreak\hspace{.05em}(\@publishedissue), \@publishedarticlenum
}%
\fi
% 3. ASAP Version: put submission/acceptance dates in left footer and "ASAP Version" in right footer
\if@ASAPversion
\lfoot{\ifthenelse{\value{page}=1}
{\small\color{LiveCoMSMediumGrey}Received: \@publisheddatereceived \\ Accepted: \@publisheddateaccepted}
{~\\~}
}%
\rfoot{\small\color{LiveCoMSMediumGrey}\href{https://doi.org/\@publishedDOI}{https://doi.org/\@publishedDOI}\\
{\it Living J. Comp. Mol. Sci.} ASAP Version
}%
\fi
% 4. Page Number in center of footer
\cfoot{\small\color{white} \vspace{\baselineskip} \small\color{LiveCoMSMediumGrey} \thepage\space of\space\pageref{LastPage}}%
\preto{\footrule}{\color{LiveCoMSMediumGrey}}
\renewcommand{\headrulewidth}{0pt}% % No header rule
\renewcommand{\footrulewidth}{0.4pt}% % No footer rule
%----------------------------------------------------------

%
% section/subsection/paragraph set-up
Expand Down Expand Up @@ -319,6 +343,7 @@
\def\@deceased{}
% Added blurb for LiveComs
\def\@blurb{}
\def\@orcidblock{}


\newcommand{\corr}[2]{%
Expand Down Expand Up @@ -349,6 +374,16 @@
% Added for LiveComs
\newcommand{\blurb}[1]{\def\@blurb{#1}}

\newcommand{\orcid}[2]{%
\ifx\empty\@orcidblock\else\appto{\@orcidblock}{\\}{}{}\fi
\appto{\@orcidblock}{%
#1:\space%
\ifx\empty#2\else\href{https://orcid.org/#2}{#2} \fi
}{}{}%
}



\reversemarginpar

%
Expand Down Expand Up @@ -380,7 +415,7 @@

%% Abstract outside frontmatter will throw an error!
\RenewEnviron{abstract}{%
\ClassError{livecome}
\ClassError{livecoms}
{Nope nope nope, please put the abstract inside the frontmatter environment.}
{Please put the abstract inside the frontmatter environment.}
}
Expand Down Expand Up @@ -422,6 +457,12 @@
\vskip8pt
}

\newcommand{\makeorcid}{%
% \textbf{*For correspondence:\\} \@correspondence\par
% \textbf{ORCID:\\} \@correspondence\par
\textbf{ORCID:\\} \@orcidblock\par
}

%% Insert a grey line to separate floats from main text
\newcommand{\topfigrule}{\vskip8pt\noindent{\rule{\linewidth}{1pt}}}
\newcommand{\botfigrule}{\noindent{\rule{\linewidth}{1pt}}\vskip8pt}
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15 changes: 13 additions & 2 deletions manuscript/manuscript.tex
Original file line number Diff line number Diff line change
Expand Up @@ -46,6 +46,13 @@
\corr{[email protected]}{CW}
\corr{[email protected]}{FN}

\orcid{Christoph Wehmeyer}{0000-0002-9526-0328}
\orcid{Martin K. Scherer}{0000-0002-7983-4387}
\orcid{Tim Hempel}{0000-0002-0073-9353}
\orcid{Brooke E. Husic}{0000-0002-8020-3750}
\orcid{Simon Olsson}{0000-0002-3927-7897}
\orcid{Frank Noé}{0000-0003-4169-9324}

\contrib[\authfn{1}]{These authors contributed equally to this work}

\blurb{This LiveCoMS document is maintained online on GitHub at \githubrepository; to provide feedback, suggestions, or help improve it, please visit the GitHub repository and participate via the issue tracker.}
Expand All @@ -57,8 +64,9 @@
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\pubDOI{10.33011/livecoms.1.1.5965}
\pubvolume{1}
\pubyear{2018}
\articlenum{1}
\pubissue{1}
\pubyear{2019}
\articlenum{5965}
\datereceived{27 July 2018}
\dateaccepted{27 November 2018}

Expand Down Expand Up @@ -686,6 +694,9 @@ \section{Funding Information}
FN and MKS acknowledge funding from Deutsche Forschungsgemeinschaft (SFB 1114, Projects A04 and C03, NO 825/2-2).
FN and BEH acknowledge funding from European Commission (ERC CoG 772230 "ScaleCell").

\section*{Author Information}
\makeorcid

\bibliography{literature}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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