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bump monty to use the monty.json import speedup patch, add import time regression test, lazy load some rarely used but costly modules #4128

Merged
merged 49 commits into from
Nov 13, 2024
Merged

bump monty to use the monty.json import speedup patch, add import time regression test, lazy load some rarely used but costly modules #4128

merged 49 commits into from
Nov 13, 2024

Commits on Oct 22, 2024

  1. copy pyproject from 4073

    @DanielYang59
    DanielYang59 committed Oct 22, 2024
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  2. bump monty

    @DanielYang59
    DanielYang59 committed Oct 22, 2024
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  3. recover networkx pin, and bump sympy

    @DanielYang59
    DanielYang59 committed Oct 22, 2024
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  4. pin monty to lower ver to see what is causing the failure

    @DanielYang59
    DanielYang59 committed Oct 22, 2024
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  5. revert all changes to pyproject but monty

    @DanielYang59
    DanielYang59 committed Oct 22, 2024
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  6. bump sympy

    @DanielYang59
    DanielYang59 committed Oct 22, 2024
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  7. sort and group optional deps

    @DanielYang59
    DanielYang59 committed Oct 22, 2024
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  8. loose networkx pin for compatibility

    @DanielYang59
    DanielYang59 committed Oct 22, 2024
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  9. lazy import sympy

    @DanielYang59
    DanielYang59 committed Oct 22, 2024
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  10. lazy load scipy

    @DanielYang59
    DanielYang59 committed Oct 22, 2024
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  11. Revert "lazy load scipy" 

    This reverts commit 9688244.
    @DanielYang59
    DanielYang59 committed Oct 22, 2024
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  12. try netcdf4 install with delvewheel, materialsproject@1dfc9e4

    @DanielYang59
    DanielYang59 committed Oct 22, 2024
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  13. Revert "try netcdf4 install with delvewheel, materialsproject@1dfc9e4" 

    This reverts commit 75e23b1.
    @DanielYang59
    DanielYang59 committed Oct 22, 2024
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Commits on Oct 23, 2024

  1. Merge branch 'master' into bump-monty-json

    @shyuep
    shyuep authored Oct 23, 2024
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  2. test netcdf4 1.7.1.post2, notice new release is out today

    @DanielYang59
    DanielYang59 committed Oct 23, 2024
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  3. netcdf4 1.7.1.post2 doesn't work, try latest 1.7.2

    @DanielYang59
    DanielYang59 committed Oct 23, 2024
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  4. reset netcdf4 pin

    @DanielYang59
    DanielYang59 committed Oct 23, 2024
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  5. why <= doesn't work?

    @DanielYang59
    DanielYang59 committed Oct 23, 2024
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  6. add comment

    @DanielYang59
    DanielYang59 committed Oct 23, 2024
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  7. exclude 1.7.2 as well (perhaps conditionally skip that test?)

    @DanielYang59
    DanielYang59 committed Oct 23, 2024
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  8. add place holder

    @DanielYang59
    DanielYang59 committed Oct 23, 2024
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Commits on Oct 26, 2024

  1. enhance comment

    @DanielYang59
    DanielYang59 committed Oct 26, 2024
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  2. add TODO tag

    @DanielYang59
    DanielYang59 committed Oct 26, 2024
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  3. Merge remote-tracking branch 'upstream/master' into bump-monty-json

    @DanielYang59
    DanielYang59 committed Oct 26, 2024
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  4. Merge branch 'master' into bump-monty-json

    @DanielYang59
    DanielYang59 authored Oct 26, 2024
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  5. tweak placeholder

    @DanielYang59
    DanielYang59 committed Oct 26, 2024
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  6. Merge branch 'bump-monty-json' of https://github.com/DanielYang59/pym… 

    …atgen into bump-monty-json
    @DanielYang59
    DanielYang59 committed Oct 26, 2024
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  7. replace assert_allclose for scalar compare

    @DanielYang59
    DanielYang59 committed Oct 26, 2024
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  8. replace assert_allclose with isclose

    @DanielYang59
    DanielYang59 committed Oct 26, 2024
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  9. fix is close

    @DanielYang59
    DanielYang59 committed Oct 26, 2024
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  10. use np.allclose over np.all(np.isclose())

    @DanielYang59
    DanielYang59 committed Oct 26, 2024
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  11. lazy import AseAtomsAdaptor

    @DanielYang59
    DanielYang59 committed Oct 26, 2024
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  12. guard type check import

    @DanielYang59
    DanielYang59 committed Oct 26, 2024
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  13. lazy import matplotlib

    @DanielYang59
    DanielYang59 committed Oct 26, 2024
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  14. toggle reference generation

    @DanielYang59
    DanielYang59 committed Oct 26, 2024
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  15. update import time records

    @DanielYang59
    DanielYang59 committed Oct 26, 2024
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  16. skip in not CI env

    @DanielYang59
    DanielYang59 committed Oct 26, 2024
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  17. include current time in err msg

    @DanielYang59
    DanielYang59 committed Oct 26, 2024
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  18. loose hard threshold to 100%, as it appear macos runner is prone to f… 

    …luctuation
    @DanielYang59
    DanielYang59 committed Oct 26, 2024
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  19. update type

    @DanielYang59
    DanielYang59 committed Oct 26, 2024
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  20. skip test for macos

    @DanielYang59
    DanielYang59 committed Oct 26, 2024
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  21. add PR tag for easy tracing

    @DanielYang59
    DanielYang59 committed Oct 26, 2024
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  22. use perf_counter_ns for precision

    @DanielYang59
    DanielYang59 committed Oct 26, 2024
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Commits on Oct 27, 2024

  1. Merge branch 'master' into bump-monty-json

    @DanielYang59
    DanielYang59 authored Oct 27, 2024
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Commits on Oct 30, 2024

  1. bump torch timeout all the way to 5 min

    @DanielYang59
    DanielYang59 committed Oct 30, 2024
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  2. Revert "bump torch timeout all the way to 5 min" 

    This reverts commit 9c3d186.
    @DanielYang59
    DanielYang59 committed Oct 30, 2024
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  3. Merge branch 'master' into bump-monty-json

    @DanielYang59
    DanielYang59 authored Oct 30, 2024
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  4. migrate missing allclose relative tolerance

    @DanielYang59
    DanielYang59 committed Oct 30, 2024
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Commits on Nov 13, 2024

  1. Merge remote-tracking branch 'upstream/master' into bump-monty-json

    @DanielYang59
    DanielYang59 committed Nov 13, 2024
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