view for pipelines, not UI

maxplanck-ie · Oct 29, 2024 · 66ced41 · 66ced41
1 parent 238d419
commit 66ced41
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Showing 3 changed files with 16 additions and 0 deletions.
diff --git a/backend/library_sample_shared/serializers.py b/backend/library_sample_shared/serializers.py
@@ -16,6 +16,12 @@
 )
 
 
+class OrganismFullSerializer(ModelSerializer):
+    class Meta:
+        model = Organism
+        fields = '__all__'
+
+
 class OrganismSerializer(ModelSerializer):
     class Meta:
         model = Organism

diff --git a/backend/library_sample_shared/views.py b/backend/library_sample_shared/views.py
@@ -26,6 +26,7 @@
     IndexTypeSerializer,
     LibraryProtocolSerializer,
     LibraryTypeSerializer,
+    OrganismFullSerializer,
     OrganismSerializer,
     ReadLengthSerializer,
 )
@@ -64,6 +65,13 @@ def _get_data(self, serializer):
         return data
 
 
+class OrganismFullViewSet(MoveOtherMixin, viewsets.ReadOnlyModelViewSet):
+    """Get the list of organisms with all of their fields. To be used by pipelines instead of UI"""
+
+    queryset = Organism.objects.order_by("name")
+    serializer_class = OrganismFullSerializer
+
+
 class OrganismViewSet(MoveOtherMixin, viewsets.ReadOnlyModelViewSet):
     """Get the list of organisms."""
 

diff --git a/backend/wui/api.py b/backend/wui/api.py
@@ -26,6 +26,7 @@
     LibraryProtocolInvoicingViewSet,
     LibraryProtocolViewSet,
     LibraryTypeViewSet,
+    OrganismFullViewSet,
     OrganismViewSet,
     ReadLengthInvoicingViewSet,
     ReadLengthViewSet,
@@ -43,6 +44,7 @@
 router.register(r"requests", RequestViewSet, basename="request")
 router.register(r"approve", ApproveViewSet, basename="approve")
 router.register(r"cost_units", CostUnitsViewSet, basename="cost-units")
+router.register(r"organisms_full", OrganismFullViewSet, basename="organism-full")
 router.register(r"organisms", OrganismViewSet, basename="organism")
 router.register(r"read_lengths", ReadLengthViewSet, basename="read-length")
 router.register(