CHORES: update custom/getchromsizes tests with new data organisation (n…

…f-core#4757) update custom/getchromsizes tests with new data organisation
maxulysse · Jan 17, 2024 · 1b0ffa4 · 1b0ffa4
1 parent 56cf5a8
commit 1b0ffa4
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Showing 2 changed files with 20 additions and 28 deletions.
diff --git a/modules/nf-core/custom/getchromsizes/tests/main.nf.test b/modules/nf-core/custom/getchromsizes/tests/main.nf.test
@@ -17,9 +17,10 @@ nextflow_process {
             }
             process {
                 """
-                input[0] = [ [ id:'test', single_end:false ], // meta map
-                             file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
-                           ]
+                input[0] = Channel.of([
+                    [ id:'test' ], // meta map
+                    file(params.modules_testdata_base_path + 'genomics/sarscov2/genome/genome.fasta', checkIfExists: true)
+                ])
                 """
             }
         }
@@ -41,9 +42,10 @@ nextflow_process {
             }
             process {
                 """
-                input[0] = [ [ id:'test', single_end:false ], // meta map
-                             file(params.test_data['sarscov2']['genome']['genome_fasta_gz'], checkIfExists: true)
-                           ]
+                input[0] = Channel.of([
+                    [ id:'test' ], // meta map
+                    file(params.modules_testdata_base_path + 'genomics/sarscov2/genome/genome.fasta.gz', checkIfExists: true)
+                ])
                 """
             }
         }

diff --git a/modules/nf-core/custom/getchromsizes/tests/main.nf.test.snap b/modules/nf-core/custom/getchromsizes/tests/main.nf.test.snap