Added nf-test for emboss/cons (nf-core#6402)

modules/nf-core/emboss/cons/tests/main.nf.test

@@ -0,0 +1,57 @@
+
+nextflow_process {
+
+    name "Test Process EMBOSS_CONS"
+    script "../main.nf"
+    process "EMBOSS_CONS"
+
+    tag "modules"
+    tag "modules_nfcore"
+    tag "emboss"
+    tag "emboss/cons"
+
+    test("test-emboss-cons") {
+
+        when {
+            process {
+                """
+                input[0] = [
+				    [ id:'test', single_end:false ], // meta map
+				    file(params.modules_testdata_base_path + 'genomics/sarscov2/genome/alignment/all_sites.fas', checkIfExists: true)
+				]
+
+                """
+            }
+        }
+
+        then {
+            assertAll(
+                { assert process.success },
+                { assert snapshot(process.out).match() }
+            )
+        }
+    }
+
+    test("test-emboss-cons-stub") {
+        options '-stub'
+        when {
+            process {
+                """
+                input[0] = [
+				    [ id:'test', single_end:false ], // meta map
+				    file(params.modules_testdata_base_path + 'genomics/sarscov2/genome/alignment/all_sites.fas', checkIfExists: true)
+				]
+
+                """
+            }
+        }
+
+        then {
+            assertAll(
+                { assert process.success },
+                { assert snapshot(process.out).match() }
+            )
+        }
+    }
+
+}

modules/nf-core/emboss/cons/tests/main.nf.test.snap

@@ -0,0 +1,72 @@
+{
+    "test-emboss-cons-stub": {
+        "content": [
+            {
+                "0": [
+                    [
+                        {
+                            "id": "test",
+                            "single_end": false
+                        },
+                        "test.fa:md5,d41d8cd98f00b204e9800998ecf8427e"
+                    ]
+                ],
+                "1": [
+                    "versions.yml:md5,3495d4763506d986454c42f631314776"
+                ],
+                "consensus": [
+                    [
+                        {
+                            "id": "test",
+                            "single_end": false
+                        },
+                        "test.fa:md5,d41d8cd98f00b204e9800998ecf8427e"
+                    ]
+                ],
+                "versions": [
+                    "versions.yml:md5,3495d4763506d986454c42f631314776"
+                ]
+            }
+        ],
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "24.04.4"
+        },
+        "timestamp": "2024-08-28T13:11:24.452798"
+    },
+    "test-emboss-cons": {
+        "content": [
+            {
+                "0": [
+                    [
+                        {
+                            "id": "test",
+                            "single_end": false
+                        },
+                        "test.fa:md5,af060c54c3f15b1a376048eadf9344ec"
+                    ]
+                ],
+                "1": [
+                    "versions.yml:md5,3495d4763506d986454c42f631314776"
+                ],
+                "consensus": [
+                    [
+                        {
+                            "id": "test",
+                            "single_end": false
+                        },
+                        "test.fa:md5,af060c54c3f15b1a376048eadf9344ec"
+                    ]
+                ],
+                "versions": [
+                    "versions.yml:md5,3495d4763506d986454c42f631314776"
+                ]
+            }
+        ],
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "24.04.4"
+        },
+        "timestamp": "2024-08-28T13:11:19.557103"
+    }
+}

tests/config/pytest_modules.yml

@@ -262,9 +262,6 @@ elprep/merge:
 elprep/split:
   - modules/nf-core/elprep/split/**
   - tests/modules/nf-core/elprep/split/**
-emboss/cons:
-  - modules/nf-core/emboss/cons/**
-  - tests/modules/nf-core/emboss/cons/**
 emboss/revseq:
   - modules/nf-core/emboss/revseq/**
   - tests/modules/nf-core/emboss/revseq/**