Phenotips Docker Container

PhenoTips is a software tool for collecting and analyzing phenotypic information for patients with genetic disorders. See http://phenotips.org/ for more details.

Usage:

docker run -d --name phenotips \
    -v /phenotips/root/dir:/mnt \
    -p 8080:8080 \
    meatcar/phenotips

Now you can use PhenoTips at http://localhost:8080/, and PhenoTips' state will be preserved in /phenotips/root/dir on your machine.

To run a different PhenoTips version, set the PT_VERSION environment variable to the version you want.

The container can also expose a debugging port, when using the docker image for PhenoTips development. Set the PT_DEBUG=true environment variable on start, then connect your debugger to localhost:5050.

docker run -d --name phenotips \
    -v /phenotips/root/dir:/mnt \
    -p 8080:8080 \
    -e PT_DEBUG=true \
    meatcar/phenotips

If you want to pass a pre-built zip to the image, just mount the zip as /pt.zip:

docker run -d --name phenotips \
    -v /phenotips/root/dir:/mnt \
    -v /path/to/your/phenotips-standalone-99.9SNAPSHOT.zip:/pt.zip \
    -p 8080:8080 \
    meatcar/phenotips

See container at: https://registry.hub.docker.com/u/meatcar/infobright/