Add Julia 1.0 to Travis, update NEWS.md

.travis.yml

@@ -4,6 +4,7 @@ os:
   - windows
   - osx
 julia:
+  - 1.0
   - 1.3
   #- nightly
 notifications:

NEWS.md

@@ -1,8 +1,14 @@
 # master (unpublished)
 
-No changes yet
+### general
+- add explicit parallelism flag (`parallel_mode`) to `learn_network` to avoid having to remove workers when switching from multi-core to single-core computations
+- improve error messages in several places
+
+### bug fixes
+- fix edge case in bin filtering: variables w/o zero entries are now retained and properly discritized
+- ensure that `meta_mask` is a proper `BitVector` in `learn_network` and `normalize_data`
 
-# v0.15.0 (latest)
+# v0.15.0
 
 ### general
 - improve sign determination for conditional mutual information tests

Project.toml

@@ -3,8 +3,8 @@ uuid = "2be3f83a-7913-5748-9f20-7d448995b934"
 keywords = ["metagenomics", "microbiome", "probabilistic-graphical-models", "high-performance-computing", "compositional-data", "metadata", "ecological-network", "co-occurence", "julia", "bioinformatics"]
 license = "GPL-3.0"
 desc = "Inference of microbial interaction networks from large-scale heterogeneous abundance data"
-version = "0.15.0"
 authors = ["Janko Tackmann <[email protected]>"]
+version = "0.15.0"
 
 [deps]
 Combinatorics = "861a8166-3701-5b0c-9a16-15d98fcdc6aa"

src/FlashWeave.jl

@@ -9,7 +9,7 @@ using DataStructures
 using LightGraphs, SimpleWeightedGraphs
 
 # statistics
-using StatsBase, Distributions, Combinatorics
+using StatsBase, Combinatorics, Distributions
 
 # io
 using JSON, HDF5, FileIO