This is the pax-db.org orthology API npm module.

Example usage:

const opts = {server:'http://neo4j:7474',user:'neo4j',pass:'secret'};
const orth = require('paxdb-orthology-lib')(opts);
orth.count('Protein').then(numProteins => console.log(`num proteins: ${numProteins}`));
orth.loadOrthologs('9606.ENSP00000356969', 'PRIMATES', 'BRAIN').
    then(cogs => console.log(`orthologs: ${JSON.stringify(cogs)}`));

Installation

npm install paxdb-orthology-lib

Versioning

All versions are <major>.<minor>.<patch>, where major and minor follow pax-db.org versions.

License

MIT. See "LICENSE.txt".