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metagenome-atlas · Oct 4, 2023 · bf3ffe2 · bf3ffe2
1 parent 99037f1
commit bf3ffe2
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Showing 2 changed files with 4 additions and 5 deletions.
diff --git a/.github/workflows/python-package-conda.yml b/.github/workflows/python-package-conda.yml
@@ -86,14 +86,11 @@ jobs:
           python -m pip install . --no-deps -vv
           atlas --help
 
-      - name: Clone Example Data Repository
-        run: git clone https://github.com/metagenome-atlas/example_data.git
+      # - name: Clone Example Data Repository
+      #   run: git clone https://github.com/metagenome-atlas/example_data.git
 
       - name: Run Test
         run: |
-          ls -l 
-          ls -l example_data
-          chmod +x test/test_ci.sh
           test/test_ci.sh --resources mem=$MEM java_mem=$MEM --jobs=$N_THREADS --restart-times=2
 
       - name: Store Logs

diff --git a/test/test_ci.sh b/test/test_ci.sh
@@ -13,6 +13,8 @@ wget https://zenodo.org/record/3992790/files/test_reads.tar.gz
 tar -xzf test_reads.tar.gz 
 
 
+ls -l test_reads
+
 databaseDir="databases"
 WD='test_ci'
 reads_dir="test_reads" #"example_data/reads/test"