codespell except test and databases

metagenome-atlas · Aug 17, 2024 · d42c2ed · d42c2ed
1 parent 0dbf537
commit d42c2ed
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Showing 3 changed files with 3 additions and 3 deletions.
diff --git a/atlas/init/get_SRA_runinfo.py b/atlas/init/get_SRA_runinfo.py
@@ -87,7 +87,7 @@ def get_table_from_accessions(accessions, output_file="SRA_run_table.csv") -> No
 
 
 def parse_arguments_from_terminal():
-    ## Comand line interface
+    ## Command line interface
     import argparse
 
     parser = argparse.ArgumentParser()

diff --git a/atlas/init/kingfisher.py b/atlas/init/kingfisher.py
@@ -42,7 +42,7 @@ def add_api_key(self, other_params):
         return other_params
 
     def _retry_request(self, description, func):
-        """Retry a reqests.post or requests.get 3 times, returning the request
+        """Retry a retests.post or requests.get 3 times, returning the request
         when OK, otherwise raising an Exception"""
 
         num_retries = 3

diff --git a/setup.cfg b/setup.cfg
@@ -8,6 +8,6 @@ tag_prefix = v
 
 [codespell]
 check-filenames = 
-skip = .git,*.pdf,*.svg,versioneer.py,*.css,*.html
+skip = .git,*.pdf,*.svg,versioneer.py,*.css,*.html,databases,test
 ignore-words-list = BRITE
 check-hidden =