Skip to content

A Single Cell Genomics Lab Information Management System developed for the Ettema Lab.

License

Notifications You must be signed in to change notification settings

miccheck12/SCGLIMS

Repository files navigation

SCGLIMS

https://travis-ci.org/BILS/SCGLIMS.svg?branch=master https://coveralls.io/repos/BILS/SCGLIMS/badge.png?branch=master

SCGLIMS is a Lab Information Management System developed for the Ettema Lab by BILS.

The database implements the workflow of the Ettema Lab:

http://raw.githubusercontent.com/BILS/SCGLIMS/master/docs/images/flowchartlab.png

If your lab has a similar workflow you might be able to use the SCGLIMS as is. Otherwise an amout of tweaking might be required in which case we would recommend forking the repository and only using certain elements.

Requirements

Installation

Clone the repository to your computer:

git clone https://github.com/BILS/SCGLIMS

Local installation:

pip install -r lims_project/requirements/local.txt

Running SCGLIMS

Locally

Without example data:

cd lims_project
python manage.py syncdb --settings=lims_project.settings.local && \
python manage.py runserver 127.0.0.1:8000 --settings=lims_project.settings.local

With example data:

cd lims_project
python manage.py syncdb --settings=lims_project.settings.local && \
python manage.py loaddata example --settings=lims_project.settings.local && \
python manage.py runserver 127.0.0.1:8000 --settings=lims_project.settings.local

Contribute

Contributions are greatly appreciated, please read the contribution instructions.

About

A Single Cell Genomics Lab Information Management System developed for the Ettema Lab.

Resources

License

Stars

Watchers

Forks

Packages

No packages published