Skip to content

Commit

Permalink
Combine CI/CD into one gh workflow
Browse files Browse the repository at this point in the history
  • Loading branch information
kheal committed Nov 15, 2024
1 parent fdbfabc commit 503e267
Showing 1 changed file with 13 additions and 4 deletions.
17 changes: 13 additions & 4 deletions .github/workflows/wdl_checker.yml
Original file line number Diff line number Diff line change
Expand Up @@ -17,15 +17,24 @@ jobs:
with:
python-version: '3.8' # specify the Python version you need

- name: Install Docker
run: |
curl -fsSL https://get.docker.com -o get-docker.sh
sh get-docker.sh
sudo usermod -aG docker $USER
- name: Build Docker Image
run: |
docker build -t local-metams:latest .
- name: Install MiniWDL
run: |
python -m pip install --upgrade pip
pip install miniwdl
# TODO KRH: Add these back in once the WDL and docker images are ready
# - name: Test LCMS Lipid MiniWDL
# run: |
# miniwdl run wdl/metaMS_lipidomics.wdl -i wdl/metams_input_lipidomics.json
- name: Test Lipid MiniWDL
run: |
miniwdl run wdl/metaMS_lipidomics.wdl -i wdl/metams_input_lipidomics.json --verbose --no-cache --copy-input-files
- name: Test GCMS MiniWDL
run: |
Expand Down

0 comments on commit 503e267

Please sign in to comment.