Update configuration path names

microbiomedata · Nov 22, 2024 · d58bc20 · d58bc20
1 parent 4a28a7a
commit d58bc20
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/configuration/gcms_metams.toml b/configuration/gcms_metams.toml
@@ -1,7 +1,7 @@
 file_paths = [  "data/raw_data/GCMS_FAMES_01_GCMS-01_20191023.cdf", "data/raw_data/GCMS_FAMES_01_GCMS-01_20191023.cdf"]
 calibration_reference_path = "sqlite:///db/MetabRef_FAMEs_EILowRes_20240816.db"
 calibration_file_path = "data/raw_data/GCMS_FAMES_01_GCMS-01_20191023.cdf"
-corems_toml_path = "configuration/corems.toml"
+corems_toml_path = "configuration/gcms_corems.toml"
 nmdc_metadata_path = "configuration/nmdc_metadata.json"
 output_directory = "output"
 output_filename = "output"

diff --git a/wdl/metams_input_gcms.json b/wdl/metams_input_gcms.json
@@ -8,7 +8,7 @@
 "gcmsMetabolomics.runMetaMS.output_directory": "test_output",
 "gcmsMetabolomics.runMetaMS.output_filename": "test_dataset",
 "gcmsMetabolomics.runMetaMS.output_type": "csv",
-"gcmsMetabolomics.runMetaMS.corems_toml_path": "./configuration/corems.toml",
+"gcmsMetabolomics.runMetaMS.corems_toml_path": "./configuration/gcms_corems.toml",
 "gcmsMetabolomics.runMetaMS.nmdc_metadata_path": "./configuration/nmdc_metadata.json",
 "gcmsMetabolomics.runMetaMS.jobs_count": 4
 }