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[GSOC] implement example of state-space model for connectivity #100

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[GSOC] implement example of state-space model for connectivity #100

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05eb0a2
implement example of state-space model for connectivity
jadrew43 Jun 14, 2022
fb40a1d
mne_util imported from MEGLDS repo; some incompatibility with sample-…
jadrew43 Jun 17, 2022
c653564
added Yang et al 2016 to bib
jadrew43 Jun 23, 2022
60a04ad
changed var names (not in models.py), added folder for LDS execution,…
jadrew43 Jun 24, 2022
97b9826
does scale_sensor_data() == whitening?
jadrew43 Jun 27, 2022
87269d7
working on suggested API`
jadrew43 Jul 6, 2022
93755ac
API functioning properly, please test examples/state_space_connectivi…
jadrew43 Jul 7, 2022
aca431c
files moved to separate folder, descriptive variable names used, mne …
jadrew43 Jul 22, 2022
463b804
SNR boost added via bootstrap_subject function
jadrew43 Aug 12, 2022
5164d6c
model working; _scale_sensor_data needs changed to MNE functions
jadrew43 Aug 27, 2022
460fbbb
Deleted files from /examples. Find files in /state_space
jadrew43 Aug 29, 2022
e60d175
compare _mne_scale_sensor_data to _scale_sensor_data
jadrew43 Aug 29, 2022
71c6539
FIX: More easily runnable
larsoner Aug 30, 2022
b05fd71
FIX: Now equiv
larsoner Aug 30, 2022
39c1d1b
FIX: Better scaler (but still wrong)
larsoner Aug 30, 2022
e7ffafa
FIX: Small
larsoner Aug 30, 2022
e63252a
Final committ for GSOC - code cleaned and functioning properly
jadrew43 Sep 7, 2022
4ea5b8a
fixed merge issue
jadrew43 Sep 7, 2022
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11 changes: 11 additions & 0 deletions doc/references.bib
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Expand Up @@ -238,4 +238,15 @@ @article{StamEtAl2012
year={2012},
month={Sep},
pages={1415–1428}
}

@inproceedings{yang_state-space_2016,
title = {A state-space model of cross-region dynamic connectivity in {MEG}/{EEG}},
volume = {29},
url = {https://proceedings.neurips.cc/paper/2016/hash/9f396fe44e7c05c16873b05ec425cbad-Abstract.html},
urldate = {2021-11-21},
booktitle = {Advances in {Neural} {Information} {Processing} {Systems}},
publisher = {Curran Associates, Inc.},
author = {Yang, Ying and Aminoff, Elissa and Tarr, Michael and Robert, Kass E},
year = {2016}
}
Empty file added examples/megssm/__init__.py
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