fix DLP yaml generation for NovaX

mskcc · Sep 13, 2023 · 6ced36e · 6ced36e
1 parent 7b64043
commit 6ced36e
Showing 1 changed file with 5 additions and 1 deletion.
diff --git a/demux_run_dag.py b/demux_run_dag.py
@@ -153,7 +153,11 @@ def stats(ds, **kwargs):
                 fastq_project_dir = output_directory + "/" + project + "/"
                 chip_number = get_dlp_chip(sample_sheet, project)
                 output_yaml = fastq_project_dir + chip_number + "_metadata.yaml"
-                python_cmd = "python scripts/yaml/generate_metadata.py " + fastq_project_dir + " " + sample_sheet_path + " " + stats + " " + run_info + " " + project + " " + output_yaml + " --revcomp_i5"
+                if "FAUCI" in sequencer_and_run:
+                    python_cmd = "python scripts/yaml/generate_metadata.py " + fastq_project_dir + " " + sample_sheet_path + " " + stats + " " + run_info + " " + project + " " + output_yaml
+                else:
+                    python_cmd = "python scripts/yaml/generate_metadata.py " + fastq_project_dir + " " + sample_sheet_path + " " + stats + " " + run_info + " " + project + " " + output_yaml + " --revcomp_i5"
+
                 print("Calling DLP generate yaml command: {}".format(python_cmd))
                 subprocess.check_output(python_cmd, cwd="/home/igo/shared-single-cell", shell=True)