Update cellranger_multi.py

mskcc · Apr 15, 2024 · b809d81 · b809d81
1 parent 47dff75
commit b809d81
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/scripts/cellranger_multi.py b/scripts/cellranger_multi.py
@@ -190,7 +190,7 @@ def ch_file_generation(project_id, sample_name):
     tag_seq_dict = pd.Series(df['Hashtag sequence'].values,index=df['Hashtag Name']).to_dict()
 
     sub_sample_dict = {}
-    sub_sample_lst = df[str(df["Sample Name in IGO"]) == sample_name]["Sample Name"].tolist()
+    sub_sample_lst = df[df["Sample Name in IGO"].astype(str) == str(sample_name)]["Sample Name"].tolist()
     for item in sub_sample_lst:
         sub_sample_dict[item] = sample_tag_dict[item]