fix single index bug

mskcc · Aug 30, 2023 · dabb385 · dabb385
1 parent 6e5f70c
commit dabb385
Showing 1 changed file with 3 additions and 1 deletion.
diff --git a/scripts/dragen_csv_to_html.py b/scripts/dragen_csv_to_html.py
@@ -1,3 +1,4 @@
+from cmath import nan
 import pandas
 import sys
 from collections import OrderedDict
@@ -24,7 +25,8 @@ def build_lane_summary_html(demux_reports_dir, write_to_file):
     for i in range(1, lane_number + 1):
         df_name = "top_unknown_lane" + str(i)
         df_by_lanes[df_name] = top_unknown_barcodes_csv_covert.loc[top_unknown_barcodes_csv_covert["Lane"] == i]
-        df_by_lanes[df_name]["index"] = df_by_lanes[df_name]["index"].str.cat(df_by_lanes[df_name]["index2"], sep="-")
+        if not df_by_lanes[df_name]["index2"].isnull().values.any():
+            df_by_lanes[df_name]["index"] = df_by_lanes[df_name]["index"].str.cat(df_by_lanes[df_name]["index2"], sep="-")
         df_by_lanes[df_name] = df_by_lanes[df_name].drop("index2", axis=1)
     # format two tables in the html with different column headers
     with open(write_to_file, 'w') as _file: