GitHub - muscovitebob/EnhancerMachineLearning: A practice project with the goal of creating some decision tree and deep learning classifiers to detect enhancers from genomic sequences.

This repository has been archived by the owner on Dec 28, 2018. It is now read-only.

muscovitebob / EnhancerMachineLearning Public archive

A practice project with the goal of creating some decision tree and deep learning classifiers to detect enhancers from genomic sequences.

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Name		Name	Last commit message	Last commit date
Latest commit History 295 Commits
CBUSToutput		CBUSToutput
CNN_model_Keras		CNN_model_Keras
FMs		FMs
Get_BED_FASTA		Get_BED_FASTA
Get_bed_fasta_for_CNN		Get_bed_fasta_for_CNN
HomerOutput		HomerOutput
RSAT_IvsP_cbustout		RSAT_IvsP_cbustout
RSAT_PvsI_cbustout		RSAT_PvsI_cbustout
RSATed_homer_motifs		RSATed_homer_motifs
as_background_archives		as_background_archives
cbust_example		cbust_example
deprecated		deprecated
icistarget		icistarget
report		report
.gitignore		.gitignore
Mast_reduce.R		Mast_reduce.R
RF_GradBoost.py		RF_GradBoost.py
ROC2.png		ROC2.png
ROC4.png		ROC4.png
assistant_functions.py		assistant_functions.py
balanced_test_models.py		balanced_test_models.py
boruta-feature-ranking.csv		boruta-feature-ranking.csv
boruta_reduction.py		boruta_reduction.py
cbust		cbust
cbust_result.py		cbust_result.py
exploratory.py		exploratory.py
fastaToBed.py		fastaToBed.py
feature_matrices.py		feature_matrices.py
feature_matrix_1.csv		feature_matrix_1.csv
feature_matrix_2.csv		feature_matrix_2.csv
feature_matrix_2_mast_boruta_test_reduced.csv		feature_matrix_2_mast_boruta_test_reduced.csv
feature_matrix_2_mast_boruta_train_reduced.csv		feature_matrix_2_mast_boruta_train_reduced.csv
feature_matrix_2_mast_reduced.csv		feature_matrix_2_mast_reduced.csv
grid_search.py		grid_search.py
mast_reduce.sh		mast_reduce.sh
motif_processing_main.sh		motif_processing_main.sh
nonreduced_models.py		nonreduced_models.py
select_subset.py		select_subset.py
test_cbust_result.py		test_cbust_result.py
unbalanced_test_models.py		unbalanced_test_models.py