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Update README.md (add new AI-ready Moffitt Dataset - MICCAI'23)
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sanadeem authored May 25, 2023
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<img src="./images/DeepLIIF_logo.png" width="50%">
<h3 align="center"><strong>Deep-Learning Inferred Multiplex Immunofluorescence for Immunohistochemical Image Quantification</strong></h3>
<p align="center">
<a href="https://doi.org/10.1101/2021.05.01.442219">Journal Preprint</a>
<a href="https://rdcu.be/cKSBz">Nature MI'22 Link</a>
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<a href="https://rdcu.be/cKSBz">Journal Link</a>
<a href="https://openaccess.thecvf.com/content/CVPR2022/html/Ghahremani_DeepLIIF_An_Online_Platform_for_Quantification_of_Clinical_Pathology_Slides_CVPR_2022_paper.html">CVPR'22 Link</a>
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<a href="https://openaccess.thecvf.com/content/CVPR2022/html/Ghahremani_DeepLIIF_An_Online_Platform_for_Quantification_of_Clinical_Pathology_Slides_CVPR_2022_paper.html">CVPR Link</a>
MICCAI'23 link
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<a href="https://deepliif.org/">Cloud Deployment</a>
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<a href="https://nadeemlab.github.io/DeepLIIF/">Documentation</a>
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<a href="#docker">Docker</a>
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<a href="https://github.com/nadeemlab/DeepLIIF/tree/main/ImageJ_Plugin">ImageJ Plugin</a>
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<a href="#support">Support</a>
</p>
</p>
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co-registration, whole-cell multiplex segmentation via [ImPartial](https://github.com/nadeemlab/ImPartial), train the
DeepLIIF model and release back to the community with full credit to the contributors.

- [x] **Memorial Sloan Kettering Cancer Center** [AI-ready immunohistochemistry and multiplex immunofluorescence dataset](https://zenodo.org/record/4751737#.YKRTS0NKhH4) for breast, lung, and bladder cancers (**Nature Machine Intelligence'22**)
- [x] **Moffitt Cancer Center** AI-ready multiplex immunofluorescence and multiplex immunohistochemistry dataset for head-and-neck squamous cell carcinoma (**MICCAI'23**)

## Support
Please use the [Image.sc Forum](https://forum.image.sc/tag/deepliif) for discussion and questions related to DeepLIIF.

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* This code is inspired by [CycleGAN and pix2pix in PyTorch](https://github.com/junyanz/pytorch-CycleGAN-and-pix2pix).

## Reference
If you find our work useful in your research or if you use parts of this code, please cite our paper:
If you find our work useful in your research or if you use parts of this code or our released dataset, please cite the following papers:
```
@article{ghahremani2022deep,
title={Deep learning-inferred multiplex immunofluorescence for immunohistochemical image quantification},
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year={2022}
}
@article{ghahremani2023deepliifdataset,
title={An AI-Ready Multiplex Staining Dataset for Reproducible and Accurate Characterization of Tumor Immune Microenvironment},
author={Ghahremani, Parmida and Marino, Joseph and Hernandez-Prera, Juan and V. de la Iglesia, Janis and JC Slebos, Robbert and H. Chung, Christine and Nadeem, Saad},
journal={International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI)},
year={2023}
}
```

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