Create a new save file in library output directories holding the gene… #359

	name: generate coverage and upload to Codecov
	on:
	push:
	# branches-ignore:
	# - '**'
	branches:
	- "main"
	- "dev"

	pull_request:
	# branches-ignore:
	# - '**'
	branches:
	- "main"
	- "dev"

	jobs:
	run:
	runs-on: ${{ matrix.os }}
	strategy:
	matrix:
	os: [ubuntu-latest]
	python-version: ['3.11']

	steps:
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v2
	with:
	python-version: ${{ matrix.python-version }}

	- name: Check out repository
	uses: actions/checkout@v2
	with:
	fetch-depth: 2

	- name: Install dependencies
	run: \|
	which python
	python --version
	python -m pip install --upgrade pip
	python -m pip install -r requirements.txt
	python -m pip install -r requirements-dev.txt

	- name: Install package
	run: \|
	python setup.py build_ext -i
	python setup.py develop

	- name: Report environment information
	run: \|
	which python
	python --version
	python -c "import sys; print(f'Python {sys.version}')"
	python -c "import pip; print(f'pip {pip.__version__}')"
	python -c "import setuptools; print(f'setuptools {setuptools.__version__}')"
	python -m pip freeze

	- name: Convert notebooks
	run: \|
	python ./scripts/convert_notebook_tests.py

	- name: Run tests and generate coverage report
	run: \|
	pytest -v --cov=./ --cov-report term --cov-report=xml --color=yes

	- name: Upload coverage to Codecov
	uses: codecov/codecov-action@v3
	with:
	name: codecov-${{ matrix.os }}-py${{ matrix.python-version }}
	env_vars: OS,PYTHON
	fail_ci_if_error: true
	verbose: true

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