This repository contains code and documentation for performing dada2 analyses on Illumina NovaSeq data on Naturalis's high-performance computing infrastructure. The repository is laid out following the guidelines of Noble, 2009. The contents are made available under an MIT open source license. The following subsections are here:
- Documentation about configuring the infrastructure, adding users, installing software, and staging the code in this repository.
- Source code with additional scripts for the pipeline.
- Intermediate and result data
- Resulting plots and outputs