GH actions: try AGAIN to fix token storage #32
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Docs | |
| permissions: | |
| contents: write | |
| on: | |
| push: | |
| branches: | |
| - master | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| deploy: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python 3.10 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.10' | |
| - name: Install system libraries | |
| run: | | |
| sudo apt-get update -y -qq | |
| sudo apt-get install -y libdbus-1-3 libxkbcommon-x11-0 libxcb-icccm4 \ | |
| libxcb-image0 libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 \ | |
| libxcb-xinerama0 libxcb-xinput0 graphviz graphviz-dev \ | |
| libegl1-mesa libgl1-mesa-dri libxcb-xfixes0-dev mesa-vulkan-drivers \ | |
| libxcb-cursor0 | |
| - name: Install Python dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install pathos pygraphviz neuron cloud-volume k3d scikit-image open3d | |
| python -m pip install -e .[test-notebook,all,docs,flybrains,cloud-volume] | |
| - name: Download test data | |
| run: | | |
| chmod +x download_test_data.sh | |
| ./download_test_data.sh | |
| - name: Download downsampled test transform | |
| run: | | |
| mkdir -p -- $HOME/flybrain-data | |
| curl -o $HOME/flybrain-data/JRC2018F_JRCFIB2018F.h5 https://flyem.mrc-lmb.cam.ac.uk/flyconnectome/misc/JRC2018F_JRCFIB2018F.h5 | |
| curl -o $HOME/flybrain-data/JRC2018F_FAFB.h5 https://flyem.mrc-lmb.cam.ac.uk/flyconnectome/misc/JRC2018F_FAFB.h5 | |
| - name: Build and deploy docs | |
| uses: coactions/setup-xvfb@v1 | |
| env: | |
| NEUPRINT_APPLICATION_CREDENTIALS: ${{ secrets.neuprint }} | |
| INSECT_BRAIN_DB_USER: ${{ secrets.insect_brain_db_user }} | |
| INSECT_BRAIN_DB_PASSWORD: ${{ secrets.insect_brain_db_password }} | |
| CAVE_SECRET: ${{ secrets.cave_secret }} | |
| NAVIS_PLOT3D_BACKEND: plotly | |
| QT_QPA_PLATFORM: offscreen | |
| with: | |
| run: | | |
| python -c "import os;from caveclient import CAVEclient;client=CAVEclient();client.auth.save_token(os.getenv('CAVE_SECRET'))" | |
| mkdocs gh-deploy --force |