Merge pull request #149 from ncats/prefetch-sqlite-db

pre-fetch the sqlite database for the Docker container
ncats · May 23, 2024 · 5380dea · 5380dea
2 parents 07eea8c + 48434e0
commit 5380dea
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diff --git a/apps/ramp-server/install.R b/apps/ramp-server/install.R
@@ -10,3 +10,4 @@ install_github("ncats/RaMP-DB", force = TRUE, dependencies=TRUE)
 
 library(RaMP)
 
+rampDB <<- RaMP:::RaMP() # pre-load sqlite database to the container
diff --git a/apps/ramp-server/plumber.R b/apps/ramp-server/plumber.R
@@ -5,6 +5,8 @@ library(R.cache)
 library(readr)
 library(ggplot2)
 
+rampDB <<- RaMP:::RaMP()
+
 #* @apiTitle RaMP_API
 #* @apiDescription REST API for the Relational Database of Metabolomics Pathways (RaMP) Application
 #* @apiVersion 1.0.1
@@ -520,7 +522,7 @@ function(
 #' @param biospecimen Restrict background to particular biospecimen
 #' @param file: File
 #' @parser multi
-#' @parser text                                                               
+#' @parser text
 #' @parser json
 #' @post /api/chemical-enrichment
 function(metabolites = '', file = '', biospecimen = '', background = "database") {
Original file line number	Diff line number	Diff line change
Expand Up		@@ -10,3 +10,4 @@ install_github("ncats/RaMP-DB", force = TRUE, dependencies=TRUE)

		library(RaMP)

		rampDB <<- RaMP:::RaMP() # pre-load sqlite database to the container