Merge pull request #102 from KeithKelleher/master

fix targets.target.publications bug
ncats · May 21, 2024 · f0cc118 · f0cc118
2 parents 5bca730 + c09b9ce
commit f0cc118
Show file tree

Hide file tree

Showing 4 changed files with 4 additions and 4 deletions.
diff --git a/package.json b/package.json
@@ -1,6 +1,6 @@
 {
   "name": "pharos-graphql-server",
-  "version": "3.18.2",
+  "version": "3.19.4",
   "description": "",
   "main": "src/index.js",
   "scripts": {

diff --git a/src/models/target/targetDetails.ts b/src/models/target/targetDetails.ts
@@ -42,8 +42,7 @@ export class TargetDetails {
     }
 
     getPublications() {
-        const that = this;
-        const query = this.knex({pubmed: 'ncats_pubmed.pubmed', pp: 'protein2pubmed'})
+        const query = this.knex({pubmed: 'ncats_pubmed.pubmed', pp: 'protein2pubmed', t2tc: 't2tc'})
             .select({
                 pmid: 'pubmed.id',
                 gene_id: this.knex.raw('group_concat(pp.gene_id)'),
@@ -55,7 +54,8 @@ export class TargetDetails {
                 fetch_date: `fetch_date`
             })
             .where('pp.pubmed_id', this.knex.raw('pubmed.id'))
-            .andWhere('pp.protein_id', this.target.protein_id)
+            .andWhere('pp.protein_id', this.knex.raw('t2tc.protein_id'))
+            .andWhere('t2tc.target_id', this.target.tcrdid)
             .andWhere('pp.source', 'NCBI')
             .orderBy('pubmed.date', 'desc')
             .groupBy('pubmed.id')

diff --git a/src/pharos_config.sqlite b/src/pharos_config.sqlite
diff --git a/src/unfiltered_counts.sqlite b/src/unfiltered_counts.sqlite