Merge branch 'master' into pl/add-mainlang-defaults-refactored

.github/workflows/ruby-unit-test.yml

@@ -0,0 +1,37 @@
+name: Ruby Unit Test
+
+on: [push, pull_request]
+
+permissions:
+  contents: read
+
+jobs:
+  test:
+
+    runs-on: ubuntu-latest
+    strategy:
+      fail-fast: false
+      matrix:
+        ruby-version: ['2.7', '3.0']
+        triplestore: ['fs', 'ag']
+
+    steps:
+    - uses: actions/checkout@v4
+    - name: Install Dependencies
+      run: sudo apt-get -y install raptor2-utils
+    - name: Set up Ruby
+      uses: ruby/setup-ruby@v1
+      with:
+        ruby-version: ${{ matrix.ruby-version }}
+        bundler-cache: true # runs 'bundle install' and caches installed gems automatically
+    - name: Add config file
+      # tempoaray workaround for the config.rb file requirement
+      run:  echo 'Goo.config do |config| end' > config/config.rb
+    - name: Run tests
+      run: bundle exec rake test:docker:${{ matrix.triplestore }} TESTOPTS="-v"
+    - name: Upload coverage to Codecov
+      uses: codecov/codecov-action@v4
+      with:
+        token: ${{ secrets.CODECOV_TOKEN }}
+        flags: unittests
+        verbose: true

.gitignore

@@ -25,3 +25,5 @@ doc/
 
 .idea/*
 projectFilesBackup/*
+
+config/config.rb

Gemfile

@@ -2,20 +2,23 @@ source 'https://rubygems.org'
 
 gemspec
 
-gem 'rake'
-gem 'pry'
-gem 'simplecov'
-gem 'minitest', '< 5.0'
-gem 'activesupport'
+gem "activesupport"
+gem "cube-ruby", require: "cube"
+gem "rake"
 gem "uuid"
-gem 'cube-ruby', require: "cube"
-gem 'faraday', '~> 1.9'
+
+group :test do
+  gem "minitest", '< 5.0'
+  gem "pry"
+  gem 'simplecov'
+  gem 'simplecov-cobertura' # for submitting code coverage results to codecov.io
+end
 
 group :profiling do
-  gem 'sinatra'
-  gem 'rack-accept'
-  gem 'rack-post-body-to-params'
-  gem 'thin'
+  gem "rack-accept"
+  gem "rack-post-body-to-params"
+  gem "sinatra"
+  gem "thin"
 end
 
-gem 'sparql-client', github: 'ncbo/sparql-client', branch: 'master'
+gem 'sparql-client', github: 'ncbo/sparql-client', branch: 'develop'

Gemfile.lock

@@ -1,7 +1,7 @@
 GIT
   remote: https://github.com/ncbo/sparql-client.git
-  revision: fb4a89b420f8eb6dda5190a126b6c62e32c4c0c9
-  branch: master
+  revision: 55e7dbf858eb571c767bc67868f9af61663859cb
+  branch: develop
   specs:
     sparql-client (1.0.1)
       json_pure (>= 1.4)
@@ -12,14 +12,13 @@ PATH
   remote: .
   specs:
     goo (0.0.2)
-      addressable (= 2.3.5)
+      addressable (~> 2.8)
       pry
       rdf (= 1.0.8)
       redis
       rest-client
       rsolr
       sparql-client
-      systemu
       uuid
 
 GEM
@@ -31,125 +30,114 @@ GEM
       multi_json (~> 1.3)
       thread_safe (~> 0.1)
       tzinfo (~> 0.3.37)
-    addressable (2.3.5)
+    addressable (2.8.6)
+      public_suffix (>= 2.0.2, < 6.0)
+    base64 (0.2.0)
     builder (3.2.4)
     coderay (1.1.3)
-    concurrent-ruby (1.1.9)
+    concurrent-ruby (1.2.3)
+    connection_pool (2.4.1)
     cube-ruby (0.0.3)
     daemons (1.4.1)
     docile (1.4.0)
-    domain_name (0.5.20190701)
-      unf (>= 0.0.5, < 1.0.0)
+    domain_name (0.6.20240107)
     eventmachine (1.2.7)
-    faraday (1.10.0)
-      faraday-em_http (~> 1.0)
-      faraday-em_synchrony (~> 1.0)
-      faraday-excon (~> 1.1)
-      faraday-httpclient (~> 1.0)
-      faraday-multipart (~> 1.0)
-      faraday-net_http (~> 1.0)
-      faraday-net_http_persistent (~> 1.0)
-      faraday-patron (~> 1.0)
-      faraday-rack (~> 1.0)
-      faraday-retry (~> 1.0)
+    faraday (2.8.1)
+      base64
+      faraday-net_http (>= 2.0, < 3.1)
       ruby2_keywords (>= 0.0.4)
-    faraday-em_http (1.0.0)
-    faraday-em_synchrony (1.0.0)
-    faraday-excon (1.1.0)
-    faraday-httpclient (1.0.1)
-    faraday-multipart (1.0.3)
-      multipart-post (>= 1.2, < 3)
-    faraday-net_http (1.0.1)
-    faraday-net_http_persistent (1.2.0)
-    faraday-patron (1.0.0)
-    faraday-rack (1.0.0)
-    faraday-retry (1.0.3)
+    faraday-net_http (3.0.2)
     http-accept (1.7.0)
-    http-cookie (1.0.4)
+    http-cookie (1.0.5)
       domain_name (~> 0.5)
     i18n (0.9.5)
       concurrent-ruby (~> 1.0)
-    json_pure (2.6.1)
+    json_pure (2.7.1)
     macaddr (1.7.2)
       systemu (~> 2.6.5)
     method_source (1.0.0)
-    mime-types (3.4.1)
+    mime-types (3.5.2)
       mime-types-data (~> 3.2015)
-    mime-types-data (3.2022.0105)
+    mime-types-data (3.2024.0305)
     minitest (4.7.5)
     multi_json (1.15.0)
-    multipart-post (2.1.1)
-    mustermann (1.1.1)
+    mustermann (3.0.0)
       ruby2_keywords (~> 0.0.1)
     net-http-persistent (2.9.4)
     netrc (0.11.0)
-    pry (0.14.1)
+    pry (0.14.2)
       coderay (~> 1.1)
       method_source (~> 1.0)
-    rack (2.2.3)
+    public_suffix (5.0.4)
+    rack (2.2.8.1)
     rack-accept (0.4.5)
       rack (>= 0.4)
     rack-post-body-to-params (0.1.8)
       activesupport (>= 2.3)
-    rack-protection (2.2.0)
-      rack
-    rake (13.0.6)
+    rack-protection (3.2.0)
+      base64 (>= 0.1.0)
+      rack (~> 2.2, >= 2.2.4)
+    rake (13.1.0)
     rdf (1.0.8)
       addressable (>= 2.2)
-    redis (4.6.0)
+    redis (5.1.0)
+      redis-client (>= 0.17.0)
+    redis-client (0.21.0)
+      connection_pool
     rest-client (2.1.0)
       http-accept (>= 1.7.0, < 2.0)
       http-cookie (>= 1.0.2, < 2.0)
       mime-types (>= 1.16, < 4.0)
       netrc (~> 0.8)
+    rexml (3.2.6)
     rsolr (2.5.0)
       builder (>= 2.1.2)
       faraday (>= 0.9, < 3, != 2.0.0)
     ruby2_keywords (0.0.5)
-    simplecov (0.21.2)
+    simplecov (0.22.0)
       docile (~> 1.1)
       simplecov-html (~> 0.11)
       simplecov_json_formatter (~> 0.1)
+    simplecov-cobertura (2.1.0)
+      rexml
+      simplecov (~> 0.19)
     simplecov-html (0.12.3)
     simplecov_json_formatter (0.1.4)
-    sinatra (2.2.0)
-      mustermann (~> 1.0)
-      rack (~> 2.2)
-      rack-protection (= 2.2.0)
+    sinatra (3.2.0)
+      mustermann (~> 3.0)
+      rack (~> 2.2, >= 2.2.4)
+      rack-protection (= 3.2.0)
       tilt (~> 2.0)
     systemu (2.6.5)
-    thin (1.8.1)
+    thin (1.8.2)
       daemons (~> 1.0, >= 1.0.9)
       eventmachine (~> 1.0, >= 1.0.4)
       rack (>= 1, < 3)
     thread_safe (0.3.6)
-    tilt (2.0.10)
-    tzinfo (0.3.60)
-    unf (0.1.4)
-      unf_ext
-    unf_ext (0.0.8)
+    tilt (2.3.0)
+    tzinfo (0.3.62)
     uuid (2.3.9)
       macaddr (~> 1.0)
 
 PLATFORMS
   ruby
-  x86_64-darwin-16
+  x86_64-linux
 
 DEPENDENCIES
   activesupport
   cube-ruby
-  faraday (~> 1.9)
   goo!
   minitest (< 5.0)
   pry
   rack-accept
   rack-post-body-to-params
   rake
   simplecov
+  simplecov-cobertura
   sinatra
   sparql-client!
   thin
   uuid
 
 BUNDLED WITH
-   2.1.4
+   2.4.22