Merge pull request #405 from ncihtan/403-model-integrity-failure-chec…

…k-all-attributes-are-unique

Remove duplicated attributes for Xenium and CosMX

HTAN.model.csv

@@ -179,13 +179,7 @@ RPPA Level 4,Level 4 Reverse Phase Protein Array (RPPA) data contains intra-batc
 Nanostring CosMx SMI Experiment,RNA and Protein Panel assays applied as part of Nanostring CosMx Spatial Molecular Imager (SMI),,"Component, Filename, File Format, HTAN Parent Biospecimen ID, HTAN Data File ID, CosMx Bundle Contents, Slide ID, CosMx Assay Type, Panel Name, Protocol Link, Software and Version, Total Number of Cells, Total Number of Targets, Number of FOVs, Surface area, Experiment IF Channels, Transcripts per Cell, Percent of Transcripts within Cells, Mean Total Transcripts per Area, Unique Genes, Total Negative Probe Counts",,FALSE,Spatial Transcriptomics,Biospecimen,,
 CosMx Bundle Contents,A comma separated list of filenames within the CosMx bundle zip file,,,,TRUE,Spatial Transcriptomics,,,
 CosMx Assay Type,The specification for barcodes on each image. Either RNA probe or protein antibody according to the assay,"RNA, Protein",,,TRUE,Spatial Transcriptomics,,,
-Panel Name,"The human-readable panel name. This could be the Gene Panel name or Protein Panel name. In Xenium, this refers to the string entered as the name in panel specification (e.g. Xenium Human Immuno-Oncology Add-on B Gene Expression). In CosMx, this refers to the panel name as it appears in the CosMx catalog (e.g. CosMx Human Universal Cell Characterization Panel (1000-plex))",,,,TRUE,Spatial Transcriptomics,,,
-Total Number of Cells,The total number of cells analyzed on the flow cell,,,,TRUE,Spatial Transcriptomics,,,
-Total Number of Targets,Refers to the target of an assay. Can be genes/transcripts or probes,,,,TRUE,Spatial Transcriptomics,,,
 Number of FOVs,The total number of FOVs recorded for the sample on a single flow cell,,,,TRUE,Spatial Transcriptomics,,,
-Experiment IF Channels,"A comma-separated list with any number of channels the user deems appropriate(Example: PanCK, CD45, CD3, DAPI)",,,,TRUE,Spatial Transcriptomics,,,
-Transcripts per Cell,Mean or Median transcript count per cell analyzed on the flow cell or slide,,,,TRUE,Spatial Transcriptomics,,,
-Percent of Transcripts within Cells,The percentage of transcripts assigned to assayed cells,,,,TRUE,Spatial Transcriptomics,,,
 Mean Total Transcripts per Area,The mean total transcripts per um3,,,,TRUE,Spatial Transcriptomics,,,
 Unique Genes,The total unique genes detected above background,,,,FALSE,Spatial Transcriptomics,,,
 Total Negative Probe Counts,Mean Total Negative probe counts/cell,,,,TRUE,Spatial Transcriptomics,,,