Add nextflow config with profiles

ncihtan · Aug 3, 2023 · 6101358 · 6101358
1 parent ba566ca
commit 6101358
Showing 1 changed file with 22 additions and 0 deletions.
diff --git a/nextflow.config b/nextflow.config
@@ -0,0 +1,22 @@
+profiles {
+    local {
+        process.executor  = 'local'
+    }
+
+    docker {
+        docker.enabled    = true
+        process.container = 'ghcr.io/ncihtan/nf-imagecleaner'
+    }
+
+    tower {
+        docker.enabled    = true
+        process {
+            container     = 'ghcr.io/ncihtan/nf-imagecleaner'
+            cpus          = { 2 * task.attempt }
+            memory        = { 4.GB * task.attempt }
+            maxRetries    = 3
+            errorStrategy = 'retry'
+         }
+    }
+}
+