Add bonsai environment

neurogears · Mar 13, 2024 · 2a88678 · 2a88678
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diff --git a/.bonsai/Bonsai.config b/.bonsai/Bonsai.config
@@ -0,0 +1,149 @@
+<?xml version="1.0" encoding="utf-8"?>
+<PackageConfiguration xmlns:xsd="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
+  <Packages>
+    <Package id="AForge" version="2.2.5" />
+    <Package id="AForge.Video" version="2.2.5" />
+    <Package id="AForge.Video.DirectShow" version="2.2.5" />
+    <Package id="Bonsai" version="2.8.2" />
+    <Package id="Bonsai.Arduino" version="2.8.0" />
+    <Package id="Bonsai.Audio" version="2.8.0" />
+    <Package id="Bonsai.Core" version="2.8.1" />
+    <Package id="Bonsai.Design" version="2.8.0" />
+    <Package id="Bonsai.Design.Visualizers" version="2.8.0" />
+    <Package id="Bonsai.Dsp" version="2.8.0" />
+    <Package id="Bonsai.Dsp.Design" version="2.8.0" />
+    <Package id="Bonsai.Editor" version="2.8.1" />
+    <Package id="Bonsai.ML.LinearDynamicalSystems" version="0.1.0" />
+    <Package id="Bonsai.ML.Visualizers" version="0.1.0" />
+    <Package id="Bonsai.Osc" version="2.7.0" />
+    <Package id="Bonsai.Scripting.Expressions" version="2.8.0" />
+    <Package id="Bonsai.Scripting.Expressions.Design" version="2.8.0" />
+    <Package id="Bonsai.Scripting.Python" version="0.2.1" />
+    <Package id="Bonsai.Shaders" version="0.27.0" />
+    <Package id="Bonsai.Shaders.Design" version="0.27.0" />
+    <Package id="Bonsai.StarterPack" version="2.8.0" />
+    <Package id="Bonsai.System" version="2.8.1" />
+    <Package id="Bonsai.System.Design" version="2.8.0" />
+    <Package id="Bonsai.TensorFlow.MoveNet" version="0.1.0" />
+    <Package id="Bonsai.TensorFlow.MoveNet.Design" version="0.1.0" />
+    <Package id="Bonsai.Video" version="2.4.0" />
+    <Package id="Bonsai.Video.Design" version="2.4.0" />
+    <Package id="Bonsai.Vision" version="2.8.1" />
+    <Package id="Bonsai.Vision.Design" version="2.8.1" />
+    <Package id="Bonsai.Windows.Input" version="2.7.0" />
+    <Package id="jacobslusser.ScintillaNET" version="3.6.3" />
+    <Package id="Markdig" version="0.18.1" />
+    <Package id="Microsoft.CSharp" version="4.7.0" />
+    <Package id="Microsoft.Web.WebView2" version="1.0.1823.32" />
+    <Package id="Newtonsoft.Json" version="13.0.3" />
+    <Package id="openal.redist" version="2.0.7" />
+    <Package id="OpenCV.Net" version="3.4.2" />
+    <Package id="OpenTK" version="3.1.0" />
+    <Package id="OpenTK.GLControl" version="3.1.0" />
+    <Package id="OxyPlot.Core" version="2.1.2" />
+    <Package id="OxyPlot.WindowsForms" version="2.1.2" />
+    <Package id="pythonnet" version="3.0.3" />
+    <Package id="Rx-Core" version="2.2.5" />
+    <Package id="Rx-Interfaces" version="2.2.5" />
+    <Package id="Rx-Linq" version="2.2.5" />
+    <Package id="Rx-PlatformServices" version="2.2.5" />
+    <Package id="SvgNet" version="3.3.3" />
+    <Package id="System.Linq.Dynamic" version="1.0.7" />
+    <Package id="System.Reflection.Emit" version="4.3.0" />
+    <Package id="TensorFlowSharp-Lite" version="2.8.0" />
+    <Package id="YamlDotNet" version="13.1.1" />
+    <Package id="ZedGraph" version="5.1.7" />
+  </Packages>
+  <AssemblyReferences>
+    <AssemblyReference assemblyName="Bonsai" />
+    <AssemblyReference assemblyName="Bonsai.Arduino" />
+    <AssemblyReference assemblyName="Bonsai.Audio" />
+    <AssemblyReference assemblyName="Bonsai.Core" />
+    <AssemblyReference assemblyName="Bonsai.Design" />
+    <AssemblyReference assemblyName="Bonsai.Design.Visualizers" />
+    <AssemblyReference assemblyName="Bonsai.Dsp" />
+    <AssemblyReference assemblyName="Bonsai.Dsp.Design" />
+    <AssemblyReference assemblyName="Bonsai.Editor" />
+    <AssemblyReference assemblyName="Bonsai.ML.LinearDynamicalSystems" />
+    <AssemblyReference assemblyName="Bonsai.ML.Visualizers" />
+    <AssemblyReference assemblyName="Bonsai.Osc" />
+    <AssemblyReference assemblyName="Bonsai.Scripting.Expressions" />
+    <AssemblyReference assemblyName="Bonsai.Scripting.Expressions.Design" />
+    <AssemblyReference assemblyName="Bonsai.Scripting.Python" />
+    <AssemblyReference assemblyName="Bonsai.Shaders" />
+    <AssemblyReference assemblyName="Bonsai.Shaders.Design" />
+    <AssemblyReference assemblyName="Bonsai.System" />
+    <AssemblyReference assemblyName="Bonsai.System.Design" />
+    <AssemblyReference assemblyName="Bonsai.TensorFlow.MoveNet" />
+    <AssemblyReference assemblyName="Bonsai.TensorFlow.MoveNet.Design" />
+    <AssemblyReference assemblyName="Bonsai.Video" />
+    <AssemblyReference assemblyName="Bonsai.Video.Design" />
+    <AssemblyReference assemblyName="Bonsai.Vision" />
+    <AssemblyReference assemblyName="Bonsai.Vision.Design" />
+    <AssemblyReference assemblyName="Bonsai.Windows.Input" />
+  </AssemblyReferences>
+  <AssemblyLocations>
+    <AssemblyLocation assemblyName="AForge" processorArchitecture="MSIL" location="Packages\AForge.2.2.5\lib\AForge.dll" />
+    <AssemblyLocation assemblyName="AForge.Video" processorArchitecture="MSIL" location="Packages\AForge.Video.2.2.5\lib\AForge.Video.dll" />
+    <AssemblyLocation assemblyName="AForge.Video.DirectShow" processorArchitecture="MSIL" location="Packages\AForge.Video.DirectShow.2.2.5\lib\AForge.Video.DirectShow.dll" />
+    <AssemblyLocation assemblyName="Bonsai" processorArchitecture="MSIL" location="Packages\Bonsai.2.8.2\lib\net48\Bonsai.exe" />
+    <AssemblyLocation assemblyName="Bonsai.Arduino" processorArchitecture="MSIL" location="Packages\Bonsai.Arduino.2.8.0\lib\net462\Bonsai.Arduino.dll" />
+    <AssemblyLocation assemblyName="Bonsai.Audio" processorArchitecture="MSIL" location="Packages\Bonsai.Audio.2.8.0\lib\net462\Bonsai.Audio.dll" />
+    <AssemblyLocation assemblyName="Bonsai.Core" processorArchitecture="MSIL" location="Packages\Bonsai.Core.2.8.1\lib\net462\Bonsai.Core.dll" />
+    <AssemblyLocation assemblyName="Bonsai.Design" processorArchitecture="MSIL" location="Packages\Bonsai.Design.2.8.0\lib\net462\Bonsai.Design.dll" />
+    <AssemblyLocation assemblyName="Bonsai.Design.Visualizers" processorArchitecture="MSIL" location="Packages\Bonsai.Design.Visualizers.2.8.0\lib\net462\Bonsai.Design.Visualizers.dll" />
+    <AssemblyLocation assemblyName="Bonsai.Dsp" processorArchitecture="MSIL" location="Packages\Bonsai.Dsp.2.8.0\lib\net462\Bonsai.Dsp.dll" />
+    <AssemblyLocation assemblyName="Bonsai.Dsp.Design" processorArchitecture="MSIL" location="Packages\Bonsai.Dsp.Design.2.8.0\lib\net462\Bonsai.Dsp.Design.dll" />
+    <AssemblyLocation assemblyName="Bonsai.Editor" processorArchitecture="MSIL" location="Packages\Bonsai.Editor.2.8.1\lib\net472\Bonsai.Editor.dll" />
+    <AssemblyLocation assemblyName="Bonsai.ML.LinearDynamicalSystems" processorArchitecture="MSIL" location="Packages\Bonsai.ML.LinearDynamicalSystems.0.1.0\lib\net472\Bonsai.ML.LinearDynamicalSystems.dll" />
+    <AssemblyLocation assemblyName="Bonsai.ML.Visualizers" processorArchitecture="MSIL" location="Packages\Bonsai.ML.Visualizers.0.1.0\lib\net472\Bonsai.ML.Visualizers.dll" />
+    <AssemblyLocation assemblyName="Bonsai.Osc" processorArchitecture="MSIL" location="Packages\Bonsai.Osc.2.7.0\lib\net462\Bonsai.Osc.dll" />
+    <AssemblyLocation assemblyName="Bonsai.Scripting.Expressions" processorArchitecture="MSIL" location="Packages\Bonsai.Scripting.Expressions.2.8.0\lib\net462\Bonsai.Scripting.Expressions.dll" />
+    <AssemblyLocation assemblyName="Bonsai.Scripting.Expressions.Design" processorArchitecture="MSIL" location="Packages\Bonsai.Scripting.Expressions.Design.2.8.0\lib\net462\Bonsai.Scripting.Expressions.Design.dll" />
+    <AssemblyLocation assemblyName="Bonsai.Scripting.Python" processorArchitecture="MSIL" location="Packages\Bonsai.Scripting.Python.0.2.1\lib\net472\Bonsai.Scripting.Python.dll" />
+    <AssemblyLocation assemblyName="Bonsai.Shaders" processorArchitecture="MSIL" location="Packages\Bonsai.Shaders.0.27.0\lib\net462\Bonsai.Shaders.dll" />
+    <AssemblyLocation assemblyName="Bonsai.Shaders.Design" processorArchitecture="MSIL" location="Packages\Bonsai.Shaders.Design.0.27.0\lib\net462\Bonsai.Shaders.Design.dll" />
+    <AssemblyLocation assemblyName="Bonsai.System" processorArchitecture="MSIL" location="Packages\Bonsai.System.2.8.1\lib\net462\Bonsai.System.dll" />
+    <AssemblyLocation assemblyName="Bonsai.System.Design" processorArchitecture="MSIL" location="Packages\Bonsai.System.Design.2.8.0\lib\net462\Bonsai.System.Design.dll" />
+    <AssemblyLocation assemblyName="Bonsai.TensorFlow.MoveNet" processorArchitecture="MSIL" location="Packages\Bonsai.TensorFlow.MoveNet.0.1.0\lib\net472\Bonsai.TensorFlow.MoveNet.dll" />
+    <AssemblyLocation assemblyName="Bonsai.TensorFlow.MoveNet.Design" processorArchitecture="MSIL" location="Packages\Bonsai.TensorFlow.MoveNet.Design.0.1.0\lib\net472\Bonsai.TensorFlow.MoveNet.Design.dll" />
+    <AssemblyLocation assemblyName="Bonsai.Video" processorArchitecture="MSIL" location="Packages\Bonsai.Video.2.4.0\lib\net462\Bonsai.Video.dll" />
+    <AssemblyLocation assemblyName="Bonsai.Video.Design" processorArchitecture="MSIL" location="Packages\Bonsai.Video.Design.2.4.0\lib\net462\Bonsai.Video.Design.dll" />
+    <AssemblyLocation assemblyName="Bonsai.Vision" processorArchitecture="MSIL" location="Packages\Bonsai.Vision.2.8.1\lib\net462\Bonsai.Vision.dll" />
+    <AssemblyLocation assemblyName="Bonsai.Vision.Design" processorArchitecture="MSIL" location="Packages\Bonsai.Vision.Design.2.8.1\lib\net462\Bonsai.Vision.Design.dll" />
+    <AssemblyLocation assemblyName="Bonsai.Windows.Input" processorArchitecture="MSIL" location="Packages\Bonsai.Windows.Input.2.7.0\lib\net462\Bonsai.Windows.Input.dll" />
+    <AssemblyLocation assemblyName="Markdig" processorArchitecture="MSIL" location="Packages\Markdig.0.18.1\lib\net40\Markdig.dll" />
+    <AssemblyLocation assemblyName="Microsoft.Web.WebView2.Core" processorArchitecture="MSIL" location="Packages\Microsoft.Web.WebView2.1.0.1823.32\lib\net45\Microsoft.Web.WebView2.Core.dll" />
+    <AssemblyLocation assemblyName="Microsoft.Web.WebView2.WinForms" processorArchitecture="MSIL" location="Packages\Microsoft.Web.WebView2.1.0.1823.32\lib\net45\Microsoft.Web.WebView2.WinForms.dll" />
+    <AssemblyLocation assemblyName="Microsoft.Web.WebView2.Wpf" processorArchitecture="MSIL" location="Packages\Microsoft.Web.WebView2.1.0.1823.32\lib\net45\Microsoft.Web.WebView2.Wpf.dll" />
+    <AssemblyLocation assemblyName="Newtonsoft.Json" processorArchitecture="MSIL" location="Packages\Newtonsoft.Json.13.0.3\lib\net45\Newtonsoft.Json.dll" />
+    <AssemblyLocation assemblyName="OpenCV.Net" processorArchitecture="MSIL" location="Packages\OpenCV.Net.3.4.2\lib\net462\OpenCV.Net.dll" />
+    <AssemblyLocation assemblyName="OpenTK" processorArchitecture="MSIL" location="Packages\OpenTK.3.1.0\lib\net20\OpenTK.dll" />
+    <AssemblyLocation assemblyName="OpenTK.GLControl" processorArchitecture="MSIL" location="Packages\OpenTK.GLControl.3.1.0\lib\net20\OpenTK.GLControl.dll" />
+    <AssemblyLocation assemblyName="OxyPlot" processorArchitecture="MSIL" location="Packages\OxyPlot.Core.2.1.2\lib\net45\OxyPlot.dll" />
+    <AssemblyLocation assemblyName="OxyPlot.WindowsForms" processorArchitecture="MSIL" location="Packages\OxyPlot.WindowsForms.2.1.2\lib\net45\OxyPlot.WindowsForms.dll" />
+    <AssemblyLocation assemblyName="Python.Runtime" processorArchitecture="MSIL" location="Packages\pythonnet.3.0.3\lib\netstandard2.0\Python.Runtime.dll" />
+    <AssemblyLocation assemblyName="ScintillaNET" processorArchitecture="MSIL" location="Packages\jacobslusser.ScintillaNET.3.6.3\lib\net40\ScintillaNET.dll" />
+    <AssemblyLocation assemblyName="SVG" processorArchitecture="MSIL" location="Packages\SvgNet.3.3.3\lib\net462\SVG.dll" />
+    <AssemblyLocation assemblyName="System.Linq.Dynamic" processorArchitecture="MSIL" location="Packages\System.Linq.Dynamic.1.0.7\lib\net40\System.Linq.Dynamic.dll" />
+    <AssemblyLocation assemblyName="System.Reactive.Core" processorArchitecture="MSIL" location="Packages\Rx-Core.2.2.5\lib\net45\System.Reactive.Core.dll" />
+    <AssemblyLocation assemblyName="System.Reactive.Interfaces" processorArchitecture="MSIL" location="Packages\Rx-Interfaces.2.2.5\lib\net45\System.Reactive.Interfaces.dll" />
+    <AssemblyLocation assemblyName="System.Reactive.Linq" processorArchitecture="MSIL" location="Packages\Rx-Linq.2.2.5\lib\net45\System.Reactive.Linq.dll" />
+    <AssemblyLocation assemblyName="System.Reactive.PlatformServices" processorArchitecture="MSIL" location="Packages\Rx-PlatformServices.2.2.5\lib\net45\System.Reactive.PlatformServices.dll" />
+    <AssemblyLocation assemblyName="TensorFlowSharp" processorArchitecture="MSIL" location="Packages\TensorFlowSharp-Lite.2.8.0\lib\net472\TensorFlowSharp.dll" />
+    <AssemblyLocation assemblyName="YamlDotNet" processorArchitecture="MSIL" location="Packages\YamlDotNet.13.1.1\lib\net47\YamlDotNet.dll" />
+    <AssemblyLocation assemblyName="ZedGraph" processorArchitecture="MSIL" location="Packages\ZedGraph.5.1.7\lib\net35-Client\ZedGraph.dll" />
+  </AssemblyLocations>
+  <LibraryFolders>
+    <LibraryFolder path="Packages\Microsoft.Web.WebView2.1.0.1823.32\runtimes\win-arm64\native" platform="arm64" />
+    <LibraryFolder path="Packages\Microsoft.Web.WebView2.1.0.1823.32\runtimes\win-arm64\native_uap" platform="arm64" />
+    <LibraryFolder path="Packages\Microsoft.Web.WebView2.1.0.1823.32\runtimes\win-x64\native" platform="x64" />
+    <LibraryFolder path="Packages\Microsoft.Web.WebView2.1.0.1823.32\runtimes\win-x64\native_uap" platform="x64" />
+    <LibraryFolder path="Packages\Microsoft.Web.WebView2.1.0.1823.32\runtimes\win-x86\native" platform="x86" />
+    <LibraryFolder path="Packages\Microsoft.Web.WebView2.1.0.1823.32\runtimes\win-x86\native_uap" platform="x86" />
+    <LibraryFolder path="Packages\openal.redist.2.0.7.0\build\native\bin\x64" platform="x64" />
+    <LibraryFolder path="Packages\openal.redist.2.0.7.0\build\native\bin\x86" platform="x86" />
+    <LibraryFolder path="Packages\OpenCV.Net.3.4.2\runtimes\win-x64\native\vc14\bin" platform="x64" />
+    <LibraryFolder path="Packages\OpenCV.Net.3.4.2\runtimes\win-x86\native\vc14\bin" platform="x86" />
+  </LibraryFolders>
+</PackageConfiguration>
diff --git a/.bonsai/NuGet.config b/.bonsai/NuGet.config
@@ -0,0 +1,8 @@
+<?xml version="1.0" encoding="utf-8"?>
+<configuration>
+  <packageSources>
+    <add key="Gallery" value="Gallery" />
+    <add key="Bonsai Packages" value="https://www.myget.org/F/bonsai/api/v3/index.json" />
+    <add key="Community Packages" value="https://www.myget.org/F/bonsai-community/api/v3/index.json" />
+  </packageSources>
+</configuration>
diff --git a/.bonsai/Setup.cmd b/.bonsai/Setup.cmd
@@ -0,0 +1,4 @@
+@echo off
+pushd %~dp0
+powershell -ExecutionPolicy Bypass -File ./Setup.ps1
+popd
diff --git a/.bonsai/Setup.ps1 b/.bonsai/Setup.ps1
@@ -0,0 +1,21 @@
+Push-Location $PSScriptRoot
+if (!(Test-Path "./Bonsai.exe")) {
+    $release = "https://github.com/bonsai-rx/bonsai/releases/latest/download/Bonsai.zip"
+    $configPath = "./Bonsai.config"
+    if (Test-Path $configPath) {
+        [xml]$config = Get-Content $configPath
+        $bootstrapper = $config.PackageConfiguration.Packages.Package.where{$_.id -eq 'Bonsai'}
+        if ($bootstrapper) {
+            $version = $bootstrapper.version
+            $release = "https://github.com/bonsai-rx/bonsai/releases/download/$version/Bonsai.zip"
+        }
+    }
+    Invoke-WebRequest $release -OutFile "temp.zip"
+    Move-Item -Path "NuGet.config" "temp.config" -ErrorAction SilentlyContinue
+    Expand-Archive "temp.zip" -DestinationPath "." -Force
+    Move-Item -Path "temp.config" "NuGet.config" -Force -ErrorAction SilentlyContinue
+    Remove-Item -Path "temp.zip"
+    Remove-Item -Path "Bonsai32.exe"
+}
+& .\Bonsai.exe --no-editor
+Pop-Location
diff --git a/.gitignore b/.gitignore
@@ -1,6 +1,11 @@
+.vs
+.venv
 _site
 *.dvi
 .sass-cache
 .jekyll-cache
 .jekyll-metadata
-Gemfile.lock
+Gemfile.lock
+*.exe
+*.exe.*
+Packages