Multiple runs-on? #126
Workflow file for this run
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| name: Guide Notebooks Regression - EC2 | ||
| run-name: Guide Notebooks Regression - EC2 | ||
| on: [push] | ||
| jobs: | ||
| start_ec2_runner: | ||
| runs-on: ubuntu-latest | ||
| env: | ||
| AWS_KEY_ID: ${{ secrets.AWS_KEY_ID }} | ||
| AWS_KEY_SECRET: ${{ secrets.AWS_KEY_SECRET }} | ||
| AWS_GH_RUNNER_KEY: ${{ secrets.AWS_GH_RUNNER_KEY }} | ||
| GH_TOKEN: ${{ secrets.GH_TOKEN }} | ||
| AWS_INSTANCE_TYPE: ${{ vars.AWS_INSTANCE_TYPE }} | ||
| AWS_IMAGE_ID: ${{ vars.AWS_IMAGE_ID }} | ||
| AWS_SECURITY_GROUP: ${{ vars.AWS_SECURITY_GROUP }} | ||
| outputs: | ||
| EC2_INSTANCE_ID: ${{ steps.create_instance.outputs.EC2_INSTANCE_ID }} | ||
| RUNNER_LABEL: ${{ steps.create_instance.outputs.EC2_PUBLIC_DNS }} | ||
| steps: | ||
| - name: configure_aws | ||
| run: | | ||
| set -xe | ||
| sudo apt update | ||
| sudo apt install -y awscli jq | ||
| mkdir ${HOME}/.aws | ||
| echo "[default]" > ${HOME}/.aws/credentials | ||
| echo "aws_access_key_id = ${AWS_KEY_ID}" >> ${HOME}/.aws/credentials | ||
| echo "aws_secret_access_key = ${AWS_KEY_SECRET}" >> ${HOME}/.aws/credentials | ||
| echo "region = us-east-1" >> ${HOME}/.aws/credentials | ||
| cat ${HOME}/.aws/credentials | ||
| - name: create_instance | ||
| id: create_instance | ||
| run: | | ||
| set -xe | ||
| output=$(aws ec2 run-instances \ | ||
| --instance-type ${AWS_INSTANCE_TYPE} \ | ||
| --image-id ${AWS_IMAGE_ID} \ | ||
| --security-group-ids ${AWS_SECURITY_GROUP} \ | ||
| --key-name github_runner \ | ||
| --count 1) | ||
| EC2_INSTANCE_ID=$(echo ${output} | jq -r ".Instances[0].InstanceId") | ||
| EC2_INSTANCE_STATE='' | ||
| while [ "${EC2_INSTANCE_STATE}" != "running" ]; do | ||
| EC2_INSTANCE_STATE=$(aws ec2 describe-instances --instance-ids ${EC2_INSTANCE_ID} | jq -r ".Reservations[0].Instances[0].State.Name") | ||
| sleep 1 | ||
| done | ||
| # hack to make sure sshd comes up | ||
| sleep 120 | ||
| EC2_PUBLIC_DNS=$(aws ec2 describe-instances \ | ||
| --instance-ids ${EC2_INSTANCE_ID} \ | ||
| | jq -r ".Reservations[0].Instances[0].PublicDnsName") | ||
| echo "EC2_INSTANCE_ID=${EC2_INSTANCE_ID}" >> "$GITHUB_OUTPUT" | ||
| echo "EC2_PUBLIC_DNS=${EC2_PUBLIC_DNS}" >> "$GITHUB_OUTPUT" | ||
| echo "EC2_PUBLIC_DNS=${EC2_PUBLIC_DNS}" >> "$GITHUB_ENV" | ||
| - name: install ssh key | ||
| uses: shimataro/ssh-key-action@v2 | ||
| with: | ||
| key: ${{ secrets.AWS_GH_RUNNER_KEY }} | ||
| known_hosts: 'none' | ||
| - name: clone | ||
| uses: actions/checkout@v3 | ||
| - name: register_runner | ||
| id: register_runner | ||
| run: | | ||
| set -xe | ||
| echo ${GH_TOKEN} > gh_token | ||
| scp -o StrictHostKeyChecking=accept-new gh_token ubuntu@${EC2_PUBLIC_DNS}:gh_token | ||
| scp .github/workflows/provision_runner.sh ubuntu@${EC2_PUBLIC_DNS}:provision_runner.sh | ||
| ssh ubuntu@${EC2_PUBLIC_DNS} bash provision_runner.sh | ||
| guide_notebooks_regression_ec2: | ||
| runs-on: self-hosted | ||
| runs-on: ${{ needs.start_ec2_runner.outputs.RUNNER_LABEL }} | ||
| needs: start_ec2_runner | ||
| steps: | ||
| - name: verify-instance | ||
| env: | ||
| EC2_INSTANCE_ID: ${{ needs.start_ec2_runner.outputs.EC2_INSTANCE_ID }} | ||
| run: | | ||
| set -xe | ||
| if [[ $(ec2metadata --instance-id) != ${EC2_INSTANCE_ID} ]]; then | ||
| echo "Running on the wrong instance! Bailing, but try rerunning" | ||
| exit 1 | ||
| fi | ||
| - name: clone | ||
| uses: actions/checkout@v3 | ||
| - name: install | ||
| run: | | ||
| set -xe | ||
| cd ${{ github.workspace }} | ||
| python -m venv env | ||
| source env/bin/activate | ||
| pip install --upgrade pip | ||
| pip install matplotlib nilearn | ||
| pip install -e . | ||
| nobrainer info | ||
| - name: run | ||
| run: | | ||
| set -xe | ||
| cd ${{ github.workspace }} | ||
| git clone https://github.com/neuronets/nobrainer-book.git | ||
| cd nobrainer-book | ||
| # if there is a matching book branch, switch to it | ||
| if [ $(git ls-remote --heads https://github.com/neuronets/nobrainer-book.git ${{ github.ref_name }} | wc -l) -ne 0 ]; then | ||
| echo "Checking out branch ${{ github.ref_name }}" | ||
| git checkout ${{ github.ref_name }}; | ||
| else | ||
| echo "No matching branch found, sticking with the default" | ||
| fi | ||
| cd ${{ github.workspace }} | ||
| source env/bin/activate | ||
| for notebook_script in $(ls nobrainer-book/docs/nobrainer-guides/scripts/*.py); do | ||
| echo "running ${notebook_script}" | ||
| python ${notebook_script} | ||
| done | ||
| stop_ec2_runner: | ||
| if: always() | ||
| runs-on: ubuntu-latest | ||
| needs: [start_ec2_runner, guide_notebooks_regression_ec2] | ||
| env: | ||
| AWS_KEY_ID: ${{ secrets.AWS_KEY_ID }} | ||
| AWS_KEY_SECRET: ${{ secrets.AWS_KEY_SECRET }} | ||
| steps: | ||
| - name: configure_aws | ||
| run: | | ||
| set -xe | ||
| sudo apt update | ||
| sudo apt install -y awscli | ||
| mkdir ${HOME}/.aws | ||
| echo "[default]" > ${HOME}/.aws/credentials | ||
| echo "aws_access_key_id = ${AWS_KEY_ID}" >> ${HOME}/.aws/credentials | ||
| echo "aws_secret_access_key = ${AWS_KEY_SECRET}" >> ${HOME}/.aws/credentials | ||
| echo "region = us-east-1" >> ${HOME}/.aws/credentials | ||
| cat ${HOME}/.aws/credentials | ||
| - name: install ssh key | ||
| uses: shimataro/ssh-key-action@v2 | ||
| with: | ||
| key: ${{ secrets.AWS_GH_RUNNER_KEY }} | ||
| known_hosts: 'none' | ||
| - name: clone | ||
| uses: actions/checkout@v3 | ||
| - name: deregister_runner | ||
| id: deregister_runner | ||
| env: | ||
| EC2_INSTANCE_ID: ${{ needs.start_ec2_runner.outputs.RUNNER_LABEL }} | ||
| run: | | ||
| set -xe | ||
| echo ${GH_TOKEN} > gh_token | ||
| scp -o StrictHostKeyChecking=accept-new gh_token ubuntu@${EC2_PUBLIC_DNS}:gh_token | ||
| scp .github/workflows/provision_runner.sh ubuntu@${EC2_PUBLIC_DNS}:destroy_runner.sh | ||
| ssh ubuntu@${EC2_PUBLIC_DNS} bash destroy_runner.sh | ||
| - name: stop_runner | ||
| if: always() | ||
| env: | ||
| EC2_INSTANCE_ID: ${{ needs.start_ec2_runner.outputs.EC2_INSTANCE_ID }} | ||
| run: | | ||
| set -xe | ||
| aws ec2 terminate-instances --instance-ids ${EC2_INSTANCE_ID} | ||
