Soma summation report fix for SONATA simulations #6446
Workflow file for this run
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| name: NEURON Documentation | |
| concurrency: | |
| group: ${{ github.workflow }}#${{ github.ref }} | |
| cancel-in-progress: true | |
| on: | |
| merge_group: | |
| push: | |
| branches: | |
| - master | |
| - release/** | |
| pull_request: | |
| branches: | |
| - master | |
| - release/** | |
| env: | |
| DEFAULT_PY_VERSION: '3.11' | |
| jobs: | |
| documentation: | |
| runs-on: ubuntu-20.04 | |
| name: Documentation | |
| timeout-minutes: 25 | |
| steps: | |
| - name: Install apt packages | |
| run: | | |
| sudo apt-get update --fix-missing | |
| sudo apt-get install build-essential libopenmpi-dev libmpich-dev libx11-dev libxcomposite-dev mpich openmpi-bin | |
| sudo apt-get install ffmpeg doxygen pandoc | |
| shell: bash | |
| - name: Set up Python@${{ env.DEFAULT_PY_VERSION }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ env.DEFAULT_PY_VERSION }} | |
| - uses: actions/checkout@v3 | |
| - name: Install Python dependencies | |
| working-directory: ${{runner.workspace}}/nrn | |
| run: | | |
| python -m pip install --upgrade pip -r nrn_requirements.txt | |
| - name: Install Python documentation dependencies | |
| working-directory: ${{runner.workspace}}/nrn | |
| run: | | |
| python -m pip install --upgrade -r docs/docs_requirements.txt | |
| - name: Documentation | |
| id: documentation | |
| shell: bash | |
| working-directory: ${{runner.workspace}}/nrn | |
| run: | | |
| echo "-------- NEURON wheel --------"; | |
| python setup.py build_ext bdist_wheel; | |
| neuron_wheel=dist/NEURON*.whl; | |
| echo "-------- install wheel --------" | |
| python -m pip install $neuron_wheel; | |
| echo "-------- now build docs--------"; | |
| python setup.py docs; | |
| echo "-------- disable jekyll--------"; | |
| pushd docs/_build; | |
| touch .nojekyll; | |
| echo "-------- OK to deploy! --------"; | |
| echo "OK_TO_DEPLOY_DOCS=true" >> $GITHUB_ENV | |
| # This step will set up an SSH connection on tmate.io for live debugging. | |
| # To enable it, you have to: | |
| # * add 'live-debug-docs' to your PR title | |
| # * push something to your PR branch (note that just re-running the pipeline disregards the title update) | |
| - name: live debug session on failure (manual steps required, check `.github/docs.yml`) | |
| if: failure() && contains(github.event.pull_request.title, 'live-debug-docs') | |
| uses: mxschmitt/action-tmate@v3 | |
| - name: Deploy 🚀 | |
| uses: JamesIves/github-pages-deploy-action@v4 | |
| if: env.OK_TO_DEPLOY_DOCS == 'true' && github.ref == 'refs/heads/master' | |
| with: | |
| branch: gh-pages # The branch the action should deploy to. | |
| folder: ${{runner.workspace}}/nrn/docs/_build # The folder the action should deploy. | |
| single-commit: true #have a single commit on the deployment branch instead of maintaining the full history |