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setup-nextstrain-cli: Use a standalone installation instead of Pip/PyPI #392

setup-nextstrain-cli: Use a standalone installation instead of Pip/PyPI

setup-nextstrain-cli: Use a standalone installation instead of Pip/PyPI #392

Triggered via pull request February 16, 2024 08:16
Status Cancelled
Total duration 1m 58s
Artifacts 6

ci.yaml

on: pull_request
test-pathogen-repo-ci-failure  /  configuration
3s
test-pathogen-repo-ci-failure / configuration
test-pathogen-repo-ci-no-example-data  /  configuration
3s
test-pathogen-repo-ci-no-example-data / configuration
test-pathogen-repo-ci  /  configuration
4s
test-pathogen-repo-ci / configuration
test-docs-ci-conda  /  build-conda
1m 14s
test-docs-ci-conda / build-conda
test-docs-ci-conda  /  build-pip
0s
test-docs-ci-conda / build-pip
test-docs-ci-pip  /  build-conda
0s
test-docs-ci-pip / build-conda
test-docs-ci-pip  /  build-pip
56s
test-docs-ci-pip / build-pip
lint
6s
lint
Matrix: test-pathogen-repo-build
Matrix: test-setup-nextstrain-cli
Matrix: test-pathogen-repo-ci-failure / build
Matrix: test-pathogen-repo-ci-no-example-data / build
Matrix: test-pathogen-repo-ci / build
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Annotations

7 errors and 4 warnings
test-setup-nextstrain-cli (os=macos-latest)
Process completed with exit code 1.
test-pathogen-repo-build (conda) / run-build
Process completed with exit code 22.
test-pathogen-repo-build (docker) / run-build
Process completed with exit code 22.
test-pathogen-repo-build (aws-batch) / run-build
Process completed with exit code 22.
test-setup-nextstrain-cli (os=windows-latest)
Process completed with exit code 127.
test-pathogen-repo-ci-failure / build (docker)
Process completed with exit code 1.
test-pathogen-repo-ci-failure / build (conda)
Process completed with exit code 1.
test-pathogen-repo-build (conda) / run-build
No files were found with the provided path: build.log auspice/ results/ benchmarks/ logs/ .snakemake/log/. No artifacts will be uploaded.
test-pathogen-repo-build (docker) / run-build
No files were found with the provided path: build.log auspice/ results/ benchmarks/ logs/ .snakemake/log/. No artifacts will be uploaded.
test-pathogen-repo-build (aws-batch) / run-build
No files were found with the provided path: build.log auspice/ results/ benchmarks/ logs/ .snakemake/log/. No artifacts will be uploaded.
test-docs-ci-conda / build-conda
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Artifacts

Produced during runtime
Name Size
outputs-test-pathogen-repo-ci-conda Expired
279 KB
outputs-test-pathogen-repo-ci-docker Expired
276 KB
outputs-test-pathogen-repo-ci-failure-conda Expired
365 Bytes
outputs-test-pathogen-repo-ci-failure-docker Expired
365 Bytes
outputs-test-pathogen-repo-ci-no-example-data-conda Expired
149 KB
outputs-test-pathogen-repo-ci-no-example-data-docker Expired
149 KB