WIP: pathogen-repo-build: unbuffer nextstrain build output

nextstrain · Mar 12, 2024 · 0f43b8f · 0f43b8f
1 parent 5cd0ba1
commit 0f43b8f
Show file tree

Hide file tree

Showing 2 changed files with 7 additions and 2 deletions.
diff --git a/.github/workflows/pathogen-repo-build.yaml b/.github/workflows/pathogen-repo-build.yaml
@@ -267,14 +267,16 @@ jobs:
         with:
           cli-version: ">=7.4.0"
           runtime: ${{ inputs.runtime }}
+      - name: Install expect for unbuffer
+        run: sudo apt-get install expect
       - name: Run build via ${{ inputs.runtime }}
         env:
           NEXTSTRAIN_BUILD_COMMAND: ${{ inputs.run }}
         run: |
           # shellcheck disable=SC2154
           set -x
 
-          eval "$NEXTSTRAIN_BUILD_COMMAND" |& tee build.log
+          eval "unbuffer $NEXTSTRAIN_BUILD_COMMAND" |& tee build.log
       # Attempt to get the AWS Batch ID even if the run build command failed
       # as long as the runtime is `aws-batch` and the `build.log` file exists
       - if: ${{ always() && inputs.runtime == 'aws-batch' && hashFiles('build.log') != '' }}

diff --git a/.github/workflows/pathogen-repo-build.yaml.in b/.github/workflows/pathogen-repo-build.yaml.in
@@ -233,14 +233,17 @@ jobs:
           cli-version: ">=7.4.0"
           runtime: ${{ inputs.runtime }}
 
+      - name: Install expect for unbuffer
+        run: sudo apt-get install expect
+
       - name: Run build via ${{ inputs.runtime }}
         env:
           NEXTSTRAIN_BUILD_COMMAND: ${{ inputs.run }}
         run: |
           # shellcheck disable=SC2154
           set -x
 
-          eval "$NEXTSTRAIN_BUILD_COMMAND" |& tee build.log
+          eval "unbuffer $NEXTSTRAIN_BUILD_COMMAND" |& tee build.log
 
       # Attempt to get the AWS Batch ID even if the run build command failed
       # as long as the runtime is `aws-batch` and the `build.log` file exists