Fix interpolation

nextstrain · Sep 25, 2023 · 5263b5c · 5263b5c
1 parent e18552a
commit 5263b5c
Showing 1 changed file with 10 additions and 11 deletions.
diff --git a/.github/workflows/pathogen-repo-ci.yaml b/.github/workflows/pathogen-repo-ci.yaml
@@ -63,9 +63,10 @@ on:
           - conda
         required: false
 
-      workflow-root:
+      build-dir:
         description: >-
-          Path to the root of the workflow folder (e.g. one that contains a Snakefile) to run CI on.
+          The `BUILD_DIR` for `nextstrain build $BUILD_DIR`.
+          Example data is expected to be in `$BUILD_DIR/example_data/`
           Defaults to the root of the workflow repo.
         type: string
         default: ${{ github.workspace }}
@@ -236,7 +237,7 @@ jobs:
           python-version: "3.7"
 
       - name: Copy example data
-        working-directory: ${{ inputs.workflow-root }}
+        working-directory: ${{ inputs.build-dir }}
         run: |
           if [[ -d example_data ]]; then
             mkdir -p data/
@@ -246,17 +247,15 @@ jobs:
           fi
 
       - run: nextstrain build . ${{ inputs.build-args }}
-        working-directory: ${{ inputs.workflow-root }}
+        working-directory: ${{ inputs.build-dir }}
 
       - if: always()
         uses: actions/upload-artifact@v3
-        env:
-          workdir: ${{ inputs.workflow-root }}
         with:
           name: ${{ inputs.artifact-name }}-${{ matrix.runtime }}
           path: |
-            $workdir/auspice/
-            $workdir/results/
-            $workdir/benchmarks/
-            $workdir/logs/
-            $workdir/.snakemake/log/
+            ${{ inputs.build-dir }}/auspice/
+            ${{ inputs.build-dir }}/results/
+            ${{ inputs.build-dir }}/benchmarks/
+            ${{ inputs.build-dir }}/logs/
+            ${{ inputs.build-dir }}/.snakemake/log/