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merge: Support sequences without cross-checking #1631

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@victorlin victorlin commented Sep 16, 2024

Description of proposed changes

Initial prototype for sequence support in augur merge where metadata and sequence merge happens without any cross-checking.

Related issue(s)

Closes #1579

Checklist

  • Address FIXMEs
  • Add seqkit as an external dependency (c099e16)
  • Automated checks pass
  • Check if you need to add a changelog message
  • Check if you need to add tests
  • Check if you need to update docs

Preparing for use across functions.
Preparing for sequence support.
@victorlin victorlin self-assigned this Sep 16, 2024
@victorlin victorlin changed the title merge: Support --sequences + --output-sequences merge: Support sequences without cross-checking Sep 16, 2024
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Closing – the latest plan is to support at least some form of optional cross-checking.

@victorlin victorlin closed this Oct 2, 2024
@victorlin victorlin deleted the victorlin/merge-sequences-separately branch October 2, 2024 23:53
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merge: Support sequences
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