[ci skip] Merge PR 34689

Merge PR bioconda#34689, commits were: * Fix build * Merge branch 'bioconda:master' into master * Merge branch 'bioconda:master' into master * Merge branch 'bioconda:master' into master * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master Update Fork
nextstrain · May 3, 2022 · 04126d6 · 04126d6
1 parent 1bf740a
commit 04126d6
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Showing 3 changed files with 17 additions and 6 deletions.
diff --git a/recipes/proteomiqon-psmstatistics/build.sh b/recipes/proteomiqon-psmstatistics/build.sh
@@ -0,0 +1,10 @@
+#!/bin/bash
+unzip $SRC_DIR/$PKG_VERSION
+PREFIX=$(echo "${PREFIX}" | tr '\\' '/')
+DOTNET_ROOT="${PREFIX}/lib/dotnet"
+TOOL_ROOT=$DOTNET_ROOT/tools/PSMStatistics
+
+mkdir -p $PREFIX/bin $TOOL_ROOT
+cp -r $SRC_DIR/tools/net5.0/any/* $TOOL_ROOT
+cp "$RECIPE_DIR/proteomiqon-psmstatistics.sh" "$PREFIX/bin/proteomiqon-psmstatistics"
+chmod +x "$PREFIX/bin/proteomiqon-psmstatistics"
diff --git a/recipes/proteomiqon-psmstatistics/meta.yaml b/recipes/proteomiqon-psmstatistics/meta.yaml
@@ -11,15 +11,14 @@ source:
 
 build:
   noarch: generic
-  number: 0
-  script:
-    - dotnet tool install --add-source $SRC_DIR --tool-path $PREFIX/bin --version {{ version }} ProteomIQon.PSMStatistics
+  number: 1
 
 requirements:
   host:
-    - dotnet-sdk
+    - unzip
   run:
-    - dotnet-runtime
+    - openssl =1.1
+    - dotnet-runtime =5.0
 
 test:
   commands:
@@ -38,4 +37,4 @@ about:
     calculate local (PEP values) and global (Q values) false discovery rates at each consensus score. The reported peptides at user defined local and global FDR cutoffs can then
     be used as inputs for any downstream analysis be it ProteinInference or PSMBasedQuantification.
   dev_url: https://github.com/CSBiology/ProteomIQon
-  doc_url: https://csbiology.github.io/ProteomIQon/tools/PSMStatistics.html
+  doc_url: https://csbiology.github.io/ProteomIQon/tools/PSMStatistics.html
diff --git a/recipes/proteomiqon-psmstatistics/proteomiqon-psmstatistics.sh b/recipes/proteomiqon-psmstatistics/proteomiqon-psmstatistics.sh
@@ -0,0 +1,2 @@
+#!/usr/bin/env bash
+dotnet $CONDA_PREFIX/lib/dotnet/tools/PSMStatistics/ProteomIQon.PSMStatistics.dll "$@"
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1,2 @@
		#!/usr/bin/env bash
		dotnet $CONDA_PREFIX/lib/dotnet/tools/PSMStatistics/ProteomIQon.PSMStatistics.dll "$@"