[ci skip] Merge PR 34560

Merge PR bioconda#34560, commits were: * Update version to 0.0.8, fix build * Merge branch 'bioconda:master' into master * Merge branch 'bioconda:master' into master * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master Update Fork
nextstrain · Apr 28, 2022 · 35475cd · 35475cd
1 parent 29133cb
commit 35475cd
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Showing 3 changed files with 18 additions and 7 deletions.
diff --git a/recipes/proteomiqon-mzmltomzlite/build.sh b/recipes/proteomiqon-mzmltomzlite/build.sh
@@ -0,0 +1,10 @@
+#!/bin/bash
+unzip $SRC_DIR/$PKG_VERSION
+PREFIX=$(echo "${PREFIX}" | tr '\\' '/')
+DOTNET_ROOT="${PREFIX}/lib/dotnet"
+TOOL_ROOT=$DOTNET_ROOT/tools/MzMLToMzLite
+
+mkdir -p $PREFIX/bin $TOOL_ROOT
+cp -r $SRC_DIR/tools/net5.0/any/* $TOOL_ROOT
+cp "$RECIPE_DIR/proteomiqon-mzmltomzlite.sh" "$PREFIX/bin/proteomiqon-mzmltomzlite"
+chmod +x "$PREFIX/bin/proteomiqon-mzmltomzlite"
diff --git a/recipes/proteomiqon-mzmltomzlite/meta.yaml b/recipes/proteomiqon-mzmltomzlite/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "0.0.5" %}
-{% set sha256 = "b96605432a83c65cc40789c352f1e4f5d4361b13844c4b6e815c24a39c66c5e6" %}
+{% set version = "0.0.8" %}
+{% set sha256 = "eebc5e9169f59e585e7b716dfa0c1359908d3f1b886af760987af1d71f7406a9" %}
 
 package:
   name: proteomiqon-mzmltomzlite
@@ -12,14 +12,13 @@ source:
 build:
   noarch: generic
   number: 0
-  script:
-    - dotnet tool install --add-source $SRC_DIR --tool-path $PREFIX/bin --version {{ version }} ProteomIQon.MzMLToMzLite
 
 requirements:
   host:
-    - dotnet-sdk
+    - unzip
   run:
-    - dotnet-runtime
+    - dotnet-runtime =5.0
+    - openssl =1.1
 
 test:
   commands:
@@ -35,4 +34,4 @@ about:
     various performance optimized, but vendor specific and closed source formats have been developed to store raw MS data. This comes to the disadvantage for toolchain developers
     which want to provide tools for every scientist regardless of the format of their raw data.
   dev_url: https://github.com/CSBiology/ProteomIQon
-  doc_url: https://csbiology.github.io/ProteomIQon/tools/MzMLToMzLite.html
+  doc_url: https://csbiology.github.io/ProteomIQon/tools/MzMLToMzLite.html
diff --git a/recipes/proteomiqon-mzmltomzlite/proteomiqon-mzmltomzlite.sh b/recipes/proteomiqon-mzmltomzlite/proteomiqon-mzmltomzlite.sh
@@ -0,0 +1,2 @@
+#!/usr/bin/env bash
+dotnet $CONDA_PREFIX/lib/dotnet/tools/MzMLToMzLite/ProteomIQon.MzMLToMzLite.dll "$@"
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1,2 @@
		#!/usr/bin/env bash
		dotnet $CONDA_PREFIX/lib/dotnet/tools/MzMLToMzLite/ProteomIQon.MzMLToMzLite.dll "$@"