[ci skip] Merge PR 34476

Merge PR bioconda#34476, commits were: * Update meta.yaml * Re-add openssl pin * Add openssl req without pin * Remove openssl dependency, move back to nuget instead of github releases * Fix file name issue, add openssl runtime dep * Fix package build * Merge branch 'bioconda:master' into master * Merge branch 'bioconda:master' into master * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master Update Fork
nextstrain · Apr 28, 2022 · ec4c5d1 · ec4c5d1
1 parent 4bec2d0
commit ec4c5d1
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Showing 3 changed files with 20 additions and 8 deletions.
diff --git a/recipes/proteomiqon-peptidespectrummatching/build.sh b/recipes/proteomiqon-peptidespectrummatching/build.sh
@@ -0,0 +1,10 @@
+#!/bin/bash
+unzip $SRC_DIR/$PKG_VERSION
+PREFIX=$(echo "${PREFIX}" | tr '\\' '/')
+DOTNET_ROOT="${PREFIX}/lib/dotnet"
+TOOL_ROOT=$DOTNET_ROOT/tools/PeptideSpectrumMatching
+
+mkdir -p $PREFIX/bin $TOOL_ROOT
+cp -r $SRC_DIR/tools/net5.0/any/* $TOOL_ROOT
+cp "$RECIPE_DIR/proteomiqon-peptidespectrummatching.sh" "$PREFIX/bin/proteomiqon-peptidespectrummatching"
+chmod +x "$PREFIX/bin/proteomiqon-peptidespectrummatching"
diff --git a/recipes/proteomiqon-peptidespectrummatching/meta.yaml b/recipes/proteomiqon-peptidespectrummatching/meta.yaml
@@ -6,20 +6,19 @@ package:
   version: '{{ version }}'
 
 source:
-  url: https://www.nuget.org/api/v2/package/ProteomIQon.PeptideSpectrumMatching/{{ version }}
-  sha256: '{{ sha256 }}'
+  url: https://www.nuget.org/api/v2/package/ProteomIQon.PeptideSpectrumMatching/{{version}}
+  sha256: '{{sha256}}'
 
 build:
   noarch: generic
-  number: 0
-  script:
-    - dotnet tool install --add-source $SRC_DIR --tool-path $PREFIX/bin --version {{ version }} ProteomIQon.PeptideSpectrumMatching
+  number: 1
 
 requirements:
   host:
-    - dotnet-sdk
+    - unzip
   run:
-    - dotnet-runtime
+    - openssl =1.1
+    - dotnet-runtime =5.0
 
 test:
   commands:
@@ -35,4 +34,4 @@ about:
     tolerance (which defines the so called 'search space') and retrieve peptides that are theoretical candidates for a match. For each of the peptide
     candidates we create an theoretical spectrum in silico and compare it to the measured MS/MS scan.
   dev_url: https://github.com/CSBiology/ProteomIQon
-  doc_url: https://csbiology.github.io/ProteomIQon/tools/PeptideSpectrumMatching.html
+  doc_url: https://csbiology.github.io/ProteomIQon/tools/PeptideSpectrumMatching.html
diff --git a/recipes/proteomiqon-peptidespectrummatching/proteomiqon-peptidespectrummatching.sh b/recipes/proteomiqon-peptidespectrummatching/proteomiqon-peptidespectrummatching.sh
@@ -0,0 +1,3 @@
+
+#!/usr/bin/env bash
+dotnet $CONDA_PREFIX/lib/dotnet/tools/PeptideSpectrumMatching/ProteomIQon.PeptideSpectrumMatching.dll "$@"
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1,3 @@

		#!/usr/bin/env bash
		dotnet $CONDA_PREFIX/lib/dotnet/tools/PeptideSpectrumMatching/ProteomIQon.PeptideSpectrumMatching.dll "$@"