phylo: Update config section of README to reflect reality

Copied commit from zika: nextstrain/zika@810e1d2 As duplicating nextstrain/zika#51
nextstrain · Mar 27, 2024 · 1e8e98d · 1e8e98d
1 parent abb8984
commit 1e8e98d
Showing 1 changed file with 4 additions and 3 deletions.
diff --git a/phylogenetic/README.md b/phylogenetic/README.md
@@ -27,9 +27,10 @@ Once you've run the build, you can view the results in auspice:
 
 ## Configuration
 
-Configuration takes place entirely with the `Snakefile`. This can be read top-to-bottom, each rule
-specifies its file inputs and output and also its parameters. There is little redirection and each
-rule should be able to be reasoned with on its own.
+Configuration for the workflow takes place entirely within the [defaults/config_dengue.ymal](defaults/config_dengue.yaml).
+The analysis pipeline is contained in [Snakefile](Snakefile) with included [rules](rules).
+Each rule specifies its file inputs and output and pulls its parameters from the config.
+There is little redirection and each rule should be able to be reasoned with on its own.
 
 
 ### Using GenBank data