Set defaultCds to the E gene

Since dengue sequences seem to contain many mutations - too many for the browser SVG engine to render efficiently in Nextclade's sequence views - we will set the default CDS to display to the E gene as the "main" gene of interest. Viewing the full genome and other gene/CDS regions can still be displayed by selection from the dropdown menu at the top. Flagged by the following comment: nextstrain/nextclade_data#203 (comment)
nextstrain · May 30, 2024 · 3bd63f6 · 3bd63f6
1 parent 61c6c65
commit 3bd63f6
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Showing 5 changed files with 10 additions and 5 deletions.
diff --git a/nextclade/resources/all/pathogen.json b/nextclade/resources/all/pathogen.json
@@ -62,5 +62,6 @@
   "schemaVersion": "3.0.0",
   "version": {
     "tag": "unreleased"
-  }
+  },
+  "defaultCds": "E"
 }
diff --git a/nextclade/resources/denv1/pathogen.json b/nextclade/resources/denv1/pathogen.json
@@ -61,5 +61,6 @@
   "schemaVersion": "3.0.0",
   "version": {
     "tag": "unreleased"
-  }
+  },
+  "defaultCds": "E"
 }
diff --git a/nextclade/resources/denv2/pathogen.json b/nextclade/resources/denv2/pathogen.json
@@ -61,5 +61,6 @@
   "schemaVersion": "3.0.0",
   "version": {
     "tag": "unreleased"
-  }
+  },
+  "defaultCds": "E"
 }
diff --git a/nextclade/resources/denv3/pathogen.json b/nextclade/resources/denv3/pathogen.json
@@ -61,5 +61,6 @@
   "schemaVersion": "3.0.0",
   "version": {
     "tag": "unreleased"
-  }
+  },
+  "defaultCds": "E"
 }
diff --git a/nextclade/resources/denv4/pathogen.json b/nextclade/resources/denv4/pathogen.json
@@ -61,5 +61,6 @@
   "schemaVersion": "3.0.0",
   "version": {
     "tag": "unreleased"
-  }
+  },
+  "defaultCds": "E"
 }