fixup: ArgumentDefaultsHelpFormatter to automatically print default a…

…rg vals
nextstrain · Feb 12, 2024 · 5da76d9 · 5da76d9
1 parent 678fa5a
commit 5da76d9
Showing 1 changed file with 4 additions and 3 deletions.
diff --git a/ingest/bin/infer-dengue-serotype.py b/ingest/bin/infer-dengue-serotype.py
@@ -6,19 +6,20 @@
 
 def parse_args():
     parser = argparse.ArgumentParser(
-        description="Dengue specific processing of metadata, infer serotype from virus_tax_id"
+        description="Dengue specific processing of metadata, infer serotype from virus_tax_id",
+        formatter_class=argparse.ArgumentDefaultsHelpFormatter,
     )
     parser.add_argument(
         "--virus-tax-id",
         type=str,
         default="virus_tax_id",
-        help="Column name containing the NCBI taxon id of the virus serotype, default: virus_tax_id",
+        help="Column name containing the NCBI taxon id of the virus serotype.",
     )
     parser.add_argument(
         "--out-col",
         type=str,
         default="ncbi_serotype",
-        help="Column name to store the inferred serotype, default: ncbi_serotype",
+        help="Column name to store the inferred serotype.",
     )
     return parser.parse_args()