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nextstrain / dengue Public

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Automate ingest and phylogenetic workflows#38

Merged

j23414 merged 9 commits intomainnextstrain/dengue:mainfrom automate-workflowsnextstrain/dengue:automate-workflowsCopy head branch name to clipboard

Apr 9, 2024

+145-4

Conversation Commits9 (9)Checks Files changed

Commits

Commits on Apr 5, 2024

Start GH Action workflow for automation
j23414
committed
ingest-to-phylogenetic: Add phylogenetic job
j23414
committed
ingest-to-phylogenetic: Use cache to check new data
j23414
committed
ingest-to-phylo: Add inputs for Docker image
j23414
committed
ingest-to-phylo: Add schedule
j23414
committed

Commits on Apr 9, 2024

fixup: name 'send_notifications' is not defined
j23414
committed
Output dengue_serotype_genome.json files for the live build
j23414
committed
ingest-to-phylogenetic: tee hash for easy debugging
j23414
committed
ingest-to-phylogenetic: Add AWS_DEFAULT_REGION
j23414
committed

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