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Adds rest of the genes for gene coverage columns #79

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Jul 15, 2024
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Adds rest of the genes for gene coverage columns #79

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2 changes: 1 addition & 1 deletion ingest/defaults/config.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -111,7 +111,7 @@ curate:
nextclade:
min_length: 1000 # E gene length is approximately 1400nt
min_seed_cover: 0.1
gene: ['E','NS1']
gene: ['E','C','M','pr','NS1','NS2A','NS2B','NS3','NS4A','2K','NS4B','NS5']
# Nextclade Fields to rename to metadata field names.
field_map:
seqName: genbank_accession # ID field used to merge annotations
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