adding Ghana geo locations, new birds, and strain name fixes for avia…

…n flu
nextstrain · Nov 8, 2024 · 185c02e · 185c02e
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commit 185c02e
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Showing 3 changed files with 5 additions and 2 deletions.
diff --git a/source-data/avian_flu_strain_name_fix.tsv b/source-data/avian_flu_strain_name_fix.tsv
@@ -1453,4 +1453,5 @@ A/Est/Parnu/eagle/TA21-11864-1/2021	A/eagle/Est_Parnu/TA21-11864-1/2021
 A/dairy cow/Colorado/UW-9084466/2024	A/environment/Colorado/UW-9084466/2024
 A/Neogale vison/China/FD/NV/SD/L4/2021	A/Neogale_vison/China/FDNVSDL4/2021
 A/Neogale vison/China/FD/NV/SD/L3/2021	A/Neogale_vison/China/FDNVSDL3/2021
-A/HeFei04171/2024	A/HeFei/04171/2024
+A/HeFei04171/2024	A/HeFei/04171/2024
+A/EuropeanherringgullNorway/2024072365/2024	A/Europeanherringgull/Norway/2024072365/2024
diff --git a/source-data/geo_synonyms.tsv b/source-data/geo_synonyms.tsv
@@ -1243,6 +1243,7 @@ UpperEastRegion	Ghana	UpperEastRegion	UpperEastRegion
 UpperWestRegion	Ghana	UpperWestRegion	UpperWestRegion
 VoltaRegion	Ghana	VoltaRegion	VoltaRegion
 Oti	Ghana	VoltaRegion	Oti
+WesternRegion	Ghana	WesternRegion	WesternRegion
 
 # Greece
 Greece	Greece	Greece	Greece
@@ -3850,6 +3851,7 @@ SonLa	Vietnam	SonLa	SonLa
 TayNguyen	Vietnam	DakLak	TayNguyen
 TayNinh	Vietnam	TayNinh	TayNinh
 ThaiBinh	Vietnam	ThaiBinh	ThaiBinh
+ThaiNguyen	Vietnam	ThaiNguyen	ThaiNguyen
 ThanhHoa	Vietnam	ThanhHoa	ThanhHoa
 TienGiang	Vietnam	TienGiang	TienGiang
 VinhLong	Vietnam	VinhLong	VinhLong

diff --git a/vdb/avian_flu_upload.py b/vdb/avian_flu_upload.py
@@ -430,7 +430,7 @@ def format_host(self, v):
             "coturnix", "coturnixsp.", "coturniccoturnix", "coturnixjaponica","chlidoniashybridus",
             "crane", "crow", "cygnus","cyrtonyxmontezumai","curlew", "cygnusatratus", "chinese__francolin",
             "chroicocephaluscirrocephalus","corvusfrugilegus","chlidoniashybridus","circusaeruginosus,"
-            "corvussplendens", "cygnuscolumbianus", "cygnuscygnus","cygnus_cygnus", "cygnusolor",
+            "corvussplendens", "cygnuscolumbianus", "cygnuscygnus","cygnus_cygnus", "cygnusolor","dabblingduck",
             "dendrocygnaviduata","dendrocygnaautumnalis","domesticgoose","duck", "dove",
             "eagle", "egret","egyptiangoose","eurasiancurlew","eurasian__eagel__owl","emperorgoose",
             "eurasian__wigeon", "falco", "falcon",