Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
vidrl_upload: Use
Human pool <year>
as serum_id for human serum refs
Because the `serum_host` field is unreliable in fauna, seasonal-flu uses substring matches on the `serum_id` field to separate ferret, human, and mouse sera.¹ Updating the `serum_id` to be `Human pool <year>` so that it can be matched in seasonal-flu. This also has the side-effect of setting the `serum_host` field to "human" within fauna because of the `serum_id` matching in tdb/upload.py.² ¹ <https://github.com/nextstrain/seasonal-flu/blob/89f6cfd11481b2c51c50d68822c18d46ed56db51/workflow/snakemake_rules/download_from_fauna.smk#L93> ² <https://github.com/nextstrain/fauna/blob/88a607db53d36fc91482cae2009eefddf9477f97/tdb/upload.py#L382-L383>
- Loading branch information