Code

Ingest VIDRL human sera references#160

Code

Merged

joverlee521 merged 7 commits intomasternextstrain/fauna:masterfrom vidrl-human-poolsnextstrain/fauna:vidrl-human-poolsCopy head branch name to clipboardAug 29, 2024

+156-21

Commits

Commits on Aug 27, 2024

• vidrl_upload: Error early if --subtype is not provided

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• vidrl_upload: Define VIDRL specific human_serum_pattern

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• vidrl_upload: Support ingest of human pooled sera references

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• vidrl_upload: Use Human pool <year> as serum_id for human serum refs

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  joverlee521

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• vidrl_upload: Add --human-ref-only flag

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• vidrl_upload: Update VACCINE_MAPPING

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  b7bade4

Commits on Aug 28, 2024

• vidrl_upload: raise exception when year cannot be parsed for human sera

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  f1b243a