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Push live build on to nextstrain.org #33

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Aug 20, 2024
Merged

Push live build on to nextstrain.org #33

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Revert "Stage the phylogenetic build to get feedback from SME before …
j23414 Aug 16, 2024
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Update README
j23414 Aug 16, 2024
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2 changes: 0 additions & 2 deletions README.md
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# nextstrain.org/lassa

_Currently, this pathogen build is in draft state. Recent outputs are visible at [nextstrain.org/staging/lassa/l](https://nextstrain.org/staging/lassa/l) and [nextstrain.org/staging/lassa/s](https://nextstrain.org/staging/lassa/s), but it's not yet fully QCed or automated._

This repository contains two workflows for the analysis of Lassa virus data:

- [`ingest/`](./ingest) - Download data from GenBank, clean and curate it, separate into L and S segments, and upload it to S3
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2 changes: 1 addition & 1 deletion phylogenetic/build-configs/nextstrain-automation/config.yaml
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custom_rules:
- build-configs/nextstrain-automation/deploy.smk

deploy_url: "s3://nextstrain-staging"
deploy_url: "s3://nextstrain-data"