ingest: Switch to NCBI Datasets CLI to fetch data #881
Workflow file for this run
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| name: CI | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| workflow_dispatch: | |
| jobs: | |
| pathogen-ci: | |
| uses: nextstrain/.github/.github/workflows/pathogen-repo-ci.yaml@master | |
| lint: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: ~3 | |
| - run: pip install snakefmt | |
| - run: snakefmt --check --compact-diff . | |