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rebuild

rebuild #222

Workflow file for this run

name: Rebuild mpxv
on:
repository_dispatch:
types:
- rebuild
- rebuild_mpxv
workflow_dispatch:
inputs:
trial_name:
description: "If set, result will be at nextstrain.org/staging/trial/trial_name/monkeypox/mpxv"
required: false
image:
description: 'Specific container image to use for build (will override the default of "nextstrain build")'
required: false
env:
TRIAL_NAME: ${{ github.event.inputs.trial_name }}
NEXTSTRAIN_DOCKER_IMAGE: ${{ github.event.inputs.image }}
jobs:
rebuild_mpxv:
permissions:
id-token: write
uses: nextstrain/.github/.github/workflows/pathogen-repo-build.yaml@master
secrets: inherit
with:
runtime: aws-batch
env: |
NEXTSTRAIN_DOCKER_IMAGE: ${{ inputs.image }}
GITHUB_RUN_ID: ${{ github.run_id }}
SLACK_CHANNELS: monkeypox-updates
run: |
nextstrain build \
--detach \
--no-download \
--cpus 8 \
--memory 32gib \
--env AWS_DEFAULT_REGION \
--env AWS_ACCESS_KEY_ID \
--env AWS_SECRET_ACCESS_KEY \
--env GITHUB_RUN_ID \
--env SLACK_TOKEN \
--env SLACK_CHANNELS \
phylogenetic \
notify_on_deploy \
--configfiles config/mpxv/config.yaml config/nextstrain_automation.yaml \
--config auspice_prefix=$TRIAL_NAME